Optimization and Evaluation of a Coarse-Grained Model of Protein Motion Using X-Ray Crystal Data

Simple coarse-grained models, such as the Gaussian network model, have been shown to capture some of the features of equilibrium protein dynamics. We extend this model by using atomic contacts to define residue interactions and introducing more than one interaction parameter between residues. We use...

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Bibliografiske detaljer
Main Authors: Kondrashov, Dmitry A., Cui, Qiang, Phillips, George N.
Format: Artigo
Sprog:Inglês
Udgivet: Biophysical Society 2006
Fag:
Biophysical Theory and Modeling
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC1578481/
https://ncbi.nlm.nih.gov/pubmed/16891367
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1529/biophysj.106.085894
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