ALPHLARD: a Bayesian method for analyzing HLA genes from whole genome sequence data

Abstract Background Although human leukocyte antigen (HLA) genotyping based on amplicon, whole exome sequence (WES), and RNA sequence data has been achieved in recent years, accurate genotyping from whole genome sequence (WGS) data remains a challenge due to the low depth. Furthermore, there is no m...

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Hauptverfasser: Shuto Hayashi, Rui Yamaguchi, Shinichi Mizuno, Mitsuhiro Komura, Satoru Miyano, Hidewaki Nakagawa, Seiya Imoto
Format: Artigo
Sprache:Inglês
Veröffentlicht: BMC 2018-11-01
Schriftenreihe:BMC Genomics
Schlagworte:
HLA genotyping
Next generation sequencing
Whole genome sequencing
Whole exome sequencing
Cancer immunogenomics
Bayesian hierarchical model
Online Zugang:http://link.springer.com/article/10.1186/s12864-018-5169-9
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