Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data

door Zhang, Yuji, Xuan, Jianhua, de los Reyes, Benildo G, Clarke, Robert, Ressom, Habtom W
Gepubliceerd in 2008

Reverse engineering module networks by PSO-RNN hybrid modeling

door Zhang, Yuji, Xuan, Jianhua, de los Reyes, Benildo G, Clarke, Robert, Ressom, Habtom W
Gepubliceerd in 2009

Reconstruction of Gene Regulatory Modules in Cancer Cell Cycle by Multi-Source Data Integration

door Zhang, Yuji, Xuan, Jianhua, de los Reyes, Benildo G., Clarke, Robert, Ressom, Habtom W.
Gepubliceerd in 2010

Simultaneous Colorimetric Detection of a Variety of Salmonella spp. in Food and Environmental Samples by Optical Biosensing Using Oligonucleotide-Gold Nanoparticles

door Quintela, Irwin A., de los Reyes, Benildo G., Lin, Chih-Sheng, Wu, Vivian C. H.
Gepubliceerd in Front Microbiol (2019)

Novel allelic variation in the Phospholipase D alpha1 gene (OsPLDα1) of wild Oryza species implies to its low expression in rice bran

door Kaur, Amandeep, Neelam, Kumari, Kaur, Karminderbir, Kitazumi, Ai, de los Reyes, Benildo G., Singh, Kuldeep
Gepubliceerd in Sci Rep (2020)

Upstream regulatory architecture of rice genes: summarizing the baseline towards genus-wide comparative analysis of regulatory networks and allele mining

door de los Reyes, Benildo G, Mohanty, Bijayalaxmi, Yun, Song Joong, Park, Myoung-Ryoul, Lee, Dong-Yup
Gepubliceerd in Rice (N Y) (2015)

Transcriptional regulatory mechanism of alcohol dehydrogenase 1-deficient mutant of rice for cell survival under complete submergence

door Mohanty, Bijayalaxmi, Takahashi, Hirokazu, de los Reyes, Benildo G., Wijaya, Edward, Nakazono, Mikio, Lee, Dong-Yup
Gepubliceerd in Rice (N Y) (2016)

Contributions of Adaptive Plant Architecture to Transgressive Salinity Tolerance in Recombinant Inbred Lines of Rice: Molecular Mechanisms Based on Transcriptional Networks

door Pabuayon, Isaiah Catalino M., Kitazumi, Ai, Gregorio, Glenn B., Singh, Rakesh Kumar, de los Reyes, Benildo G.
Gepubliceerd in Front Genet (2020)

Networks of Physiological Adjustments and Defenses, and Their Synergy With Sodium (Na(+)) Homeostasis Explain the Hidden Variation for Salinity Tolerance Across the Cultivated Goss...

door Cushman, Kevin R., Pabuayon, Isaiah C. M., Hinze, Lori L., Sweeney, Megan E., de los Reyes, Benildo G.
Gepubliceerd in Front Plant Sci (2020)

Cis-regulatory signatures of orthologous stress-associated bZIP transcription factors from rice, sorghum and Arabidopsis based on phylogenetic footprints

door Xu, Fuyu, Park, Myoung-Ryoul, Kitazumi, Ai, Herath, Venura, Mohanty, Bijayalaxmi, Yun, Song Joong, de los Reyes, Benildo G
Gepubliceerd in 2012

Xenobiotic Effects of Chlorine Dioxide to Escherichia coli O157:H7 on Non-host Tomato Environment Revealed by Transcriptional Network Modeling: Implications to Adaptation and Selec...

door Shu, Xiaomei, Singh, Manavi, Karampudi, Naga Bhushana Rao, Bridges, David F., Kitazumi, Ai, Wu, Vivian C. H., De los Reyes, Benildo G.
Gepubliceerd in Front Microbiol (2020)

An early response regulatory cluster induced by low temperature and hydrogen peroxide in seedlings of chilling-tolerant japonica rice

door Cheng, Chen, Yun, Kil-Young, Ressom, Habtom W, Mohanty, Bijayalaxmi, Bajic, Vladimir B, Jia, Yulin, Yun, Song Joong, de los Reyes, Benildo G
Gepubliceerd in 2007

Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress

door Wijaya Edward, Mauleon Ramil, Xu Fuyu, Herath Venura, Mohanty Bijayalaxmi, Park Myoung, Yun Kil-Young, Bajic Vladimir B, Bruskiewich Richard, de los Reyes Benildo G
Gepubliceerd in 2010-01-01

Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress

door Yun, Kil-Young, Park, Myoung Ryoul, Mohanty, Bijayalaxmi, Herath, Venura, Xu, Fuyu, Mauleon, Ramil, Wijaya, Edward, Bajic, Vladimir B, Bruskiewich, Richard, de los Reyes, Benildo G
Gepubliceerd in 2010

Novel and Transgressive Salinity Tolerance in Recombinant Inbred Lines of Rice Created by Physiological Coupling-Uncoupling and Network Rewiring Effects

door Pabuayon, Isaiah C. M., Kitazumi, Ai, Cushman, Kevin R., Singh, Rakesh Kumar, Gregorio, Glenn B., Dhatt, Balpreet, Zabet-Moghaddam, Masoud, Walia, Harkamal, de los Reyes, Benildo G.
Gepubliceerd in Front Plant Sci (2021)

Potential of Oryza officinalis to augment the cold tolerance genetic mechanisms of Oryza sativa by network complementation

door Kitazumi, Ai, Pabuayon, Isaiah C. M., Ohyanagi, Hajime, Fujita, Masahiro, Osti, Bipush, Shenton, Matthew R., Kakei, Yusuke, Nakamura, Yasukazu, Brar, Darshan S., Kurata, Nori, de los Reyes, Benildo G.
Gepubliceerd in Sci Rep (2018)