MATRIX FACTORIZATION-BASED DATA FUSION FOR GENE FUNCTION PREDICTION IN BAKER’S YEAST AND SLIME MOLD

بواسطة ŽITNIK, MARINKA, ZUPAN, BLAŽ
منشور في 2014

Gene network inference by probabilistic scoring of relationships from a factorized model of interactions

بواسطة Žitnik, Marinka, Zupan, Blaž
الحاوية / القاعدة Bioinformatics (2014)

Data Imputation in Epistatic MAPs by Network-Guided Matrix Completion

بواسطة Žitnik, Marinka, Zupan, Blaž
الحاوية / القاعدة J Comput Biol (2015)

Gene network inference by fusing data from diverse distributions

بواسطة Žitnik, Marinka, Zupan, Blaž
الحاوية / القاعدة Bioinformatics (2015)

COLLECTIVE PAIRWISE CLASSIFICATION FOR MULTI-WAY ANALYSIS OF DISEASE AND DRUG DATA

بواسطة ZITNIK, MARINKA, ZUPAN, BLAZ
الحاوية / القاعدة Pac Symp Biocomput (2016)

Jumping across biomedical contexts using compressive data fusion

بواسطة Zitnik, Marinka, Zupan, Blaz
الحاوية / القاعدة Bioinformatics (2016)

Predicting multicellular function through multi-layer tissue networks

بواسطة Zitnik, Marinka, Leskovec, Jure
الحاوية / القاعدة Bioinformatics (2017)

Large-scale analysis of disease pathways in the human interactome

بواسطة Agrawal, Monica, Zitnik, Marinka, Leskovec, Jure
الحاوية / القاعدة Pac Symp Biocomput (2018)

Scalable non-negative matrix tri-factorization

بواسطة Čopar, Andrej, žitnik, Marinka, Zupan, Blaž
الحاوية / القاعدة BioData Min (2017)

Modeling polypharmacy side effects with graph convolutional networks

بواسطة Zitnik, Marinka, Agrawal, Monica, Leskovec, Jure
الحاوية / القاعدة Bioinformatics (2018)

Prioritizing network communities

بواسطة Zitnik, Marinka, Sosič, Rok, Leskovec, Jure
الحاوية / القاعدة Nat Commun (2018)

Fast optimization of non-negative matrix tri-factorization

بواسطة Čopar, Andrej, Zupan, Blaž, Zitnik, Marinka
الحاوية / القاعدة PLoS One (2019)

Identification of disease treatment mechanisms through the multiscale interactome

بواسطة Ruiz, Camilo, Zitnik, Marinka, Leskovec, Jure
الحاوية / القاعدة Nat Commun (2021)

Sieve-based relation extraction of gene regulatory networks from biological literature

بواسطة Žitnik, Slavko, Žitnik, Marinka, Zupan, Blaž, Bajec, Marko
الحاوية / القاعدة BMC Bioinformatics (2015)

Evolution of resilience in protein interactomes across the tree of life

بواسطة Zitnik, Marinka, Sosič, Rok, Feldman, Marcus W., Leskovec, Jure
الحاوية / القاعدة Proc Natl Acad Sci U S A (2019)

Discovering disease-disease associations by fusing systems-level molecular data

بواسطة Žitnik, Marinka, Janjić, Vuk, Larminie, Chris, Zupan, Blaž, Pržulj, Nataša
منشور في 2013

Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins

بواسطة Stražar, Martin, Žitnik, Marinka, Zupan, Blaž, Ule, Jernej, Curk, Tomaž
الحاوية / القاعدة Bioinformatics (2016)

GNNExplainer: Generating Explanations for Graph Neural Networks

بواسطة Ying, Rex, Bourgeois, Dylan, You, Jiaxuan, Zitnik, Marinka, Leskovec, Jure
الحاوية / القاعدة Adv Neural Inf Process Syst (2019)

SkipGNN: predicting molecular interactions with skip-graph networks

بواسطة Huang, Kexin, Xiao, Cao, Glass, Lucas M., Zitnik, Marinka, Sun, Jimeng
الحاوية / القاعدة Sci Rep (2020)

To Embed or Not: Network Embedding as a Paradigm in Computational Biology

بواسطة Nelson, Walter, Zitnik, Marinka, Wang, Bo, Leskovec, Jure, Goldenberg, Anna, Sharan, Roded
الحاوية / القاعدة Front Genet (2019)