Protocol for proteogenomic dissection of intronic splicing enhancer interactome for prediction of individualized cancer prognosis

由 Wang, Li, Wrobel, John A., Xie, Ling, Chen, Xian
發表在 STAR Protoc (2021)

Novel secretome-to-transcriptome integrated or secreto-transcriptomic approach to reveal liquid biopsy biomarkers for predicting individualized prognosis of breast cancer patients

由 Ankney, J. Astor, Xie, Ling, Wrobel, John A., Wang, Li, Chen, Xian
發表在 BMC Med Genomics (2019)

Comparison of the Membrane Proteome of Virulent Mycobacterium tuberculosis and the Attenuated Mycobacterium bovis BCG Vaccine Strain by Label-free Quantitative Proteomics

由 Gunawardena, Harsha P., Feltcher, Meghan E., Wrobel, John A., Gu, Sheng, Braunstein, Miriam, Chen, Xian
發表在 J Proteome Res (2013)

Identification of pathogenic TRAIL-expressing innate immune cells during HIV-1 infection in humanized mice by scRNA-Seq

由 Cheng, Liang, Yu, Haisheng, Wrobel, John A., Li, Guangming, Liu, Peng, Hu, Zhiyuan, Xu, Xiao-Ning, Su, Lishan
發表在 JCI Insight (2020)

A genetic approach for identifying critical residues in the fingers and palm subdomains of HIV-1 reverse transcriptase

由 Wrobel, John A., Chao, Shih-Fong, Conrad, Michael J., Merker, Jason D., Swanstrom, Ronald, Pielak, Gary J., Hutchison, Clyde A.
出版 1998

A chromatin activity based chemoproteomic approach reveals a transcriptional repressome for gene-specific silencing

由 Liu, Cui, Yu, Yanbao, Liu, Feng, Wei, Xin, Wrobel, John A., Gunawardena, Harsha P., Zhou, Li, Jin, Jian, Chen, Xian
發表在 Nat Commun (2014)

QuantFusion: Novel Unified Methodology for Enhanced Coverage and Precision in Quantifying Global Proteomic Changes in Whole Tissues

由 Gunawardena, Harsha P., O'Brien, Jonathon, Wrobel, John A., Xie, Ling, Davies, Sherri R., Li, Shunqiang, Ellis, Matthew J., Qaqish, Bahjat F., Chen, Xian
發表在 Mol Cell Proteomics (2016)

Multi-omic Dissection of Oncogenically Active Epiproteomes Identifies Drivers of Proliferative and Invasive Breast Tumors

由 Wrobel, John A., Xie, Ling, Wang, Li, Liu, Cui, Rashid, Naim, Gallagher, Kristalyn K., Xiong, Yan, Konze, Kyle D., Jin, Jian, Gatza, Michael L., Chen, Xian
發表在 iScience (2019)

Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions

由 Khatun, Jainab, Yu, Yanbao, Wrobel, John A, Risk, Brian A, Gunawardena, Harsha P, Secrest, Ashley, Spitzer, Wendy J, Xie, Ling, Wang, Li, Chen, Xian, Giddings, Morgan C
出版 2013

CPTAC Assay Portal: a repository of targeted proteomic assays

由 Whiteaker, Jeffrey R, Halusa, Goran N, Hoofnagle, Andrew N, Sharma, Vagisha, MacLean, Brendan, Yan, Ping, Wrobel, John A, Kennedy, Jacob, Mani, D R, Zimmerman, Lisa J, Meyer, Matthew R, Mesri, Mehdi, Rodriguez, Henry, Paulovich, Amanda G
出版 2014

Using the CPTAC Assay Portal to identify and implement highly characterized targeted proteomics assays

由 Whiteaker, Jeffrey R, Halusa, Goran N, Hoofnagle, Andrew N, Sharma, Vagisha, MacLean, Brendan, Yan, Ping, Wrobel, John A, Kennedy, Jacob, Mani, DR, Zimmerman, Lisa J, Meyer, Matthew R., Mesri, Mehdi, Abbatiello, Susan E, Boja, Emily, Carr, Steven A., Chan, Daniel W., Chen, Xian, Chen, Jing, Davies, Sherri R, Ellis, Matthew J. C., Fenyö, David, Hiltke, Tara, Ketchum, Karen A., Kinsinger, Chris, Kuhn, Eric, Liebler, Daniel C., Lin, De, Liu, Tao, Loss, Michael, MacCoss, Michael J, Qian, Wei-Jun, Rivers, Robert, Rodland, Karin D., Ruggles, Kelly V, Scott, Mitchell G, Smith, Richard D., Thomas, Stefani, Townsend, R. Reid, Whiteley, Gordon, Wu, Chaochao, Zhang, Hui, Zhang, Zhen, Rodriguez, Henry, Paulovich, Amanda G
發表在 Methods Mol Biol (2016)

Recommendations for the generation, quantification, storage and handling of peptides used for mass spectrometry-based assays

由 Hoofnagle, Andrew N., Whiteaker, Jeffrey R., Carr, Steven A., Kuhn, Eric, Liu, Tao, Massoni, Sam A., Thomas, Stefani N., Townsend, R. Reid, Zimmerman, Lisa J., Boja, Emily, Chen, Jing, Crimmins, Daniel L., Davies, Sherri R., Gao, Yuqian, Hiltke, Tara R., Ketchum, Karen A., Kinsinger, Christopher R., Mesri, Mehdi, Meyer, Matthew R., Qian, Wei-Jun, Schoenherr, Regine M., Scott, Mitchell G., Shi, Tujin, Whiteley, Gordon R., Wrobel, John A., Wu, Chaochao, Ackermann, Brad L., Aebersold, Ruedi, Barnidge, David R., Bunk, David M., Clarke, Nigel, Fishman, Jordan B., Grant, Russ P., Kusebauch, Ulrike, Kushnir, Mark M., Lowenthal, Mark S., Moritz, Robert L., Neubert, Hendrik, Patterson, Scott D., Rockwood, Alan L., Rogers, John, Singh, Ravinder J., Van Eyk, Jenny, Wong, Steven, Zhang, Shucha, Chan, Daniel W., Chen, Xian, Ellis, Matthew J., Liebler, Daniel C., Rodland, Karin D., Rodriguez, Henry, Smith, Richard D., Zhang, Zhen, Zhang, Hui, Paulovich, Amanda G.
發表在 Clin Chem (2016)