MDD-Palm: Identification of protein S-palmitoylation sites with substrate motifs based on maximal dependence decomposition

מאת Weng, Shun-Long, Kao, Hui-Ju, Huang, Chien-Hsun, Lee, Tzong-Yi
הוצא לאור ב PLoS One (2017)

A new scheme to discover functional associations and regulatory networks of E3 ubiquitin ligases

מאת Huang, Kai-Yao, Weng, Julia Tzu-Ya, Lee, Tzong-Yi, Weng, Shun-Long
הוצא לאור ב BMC Syst Biol (2016)

iDPGK: characterization and identification of lysine phosphoglycerylation sites based on sequence-based features

מאת Huang, Kai-Yao, Hung, Fang-Yu, Kao, Hui-Ju, Lau, Hui-Hsuan, Weng, Shun-Long
הוצא לאור ב BMC Bioinformatics (2020)

Metagenomic analysis of the gut microbiome composition associated with vitamin D supplementation in Taiwanese infants

מאת Lei, Wei-Te, Huang, Kai-Yao, Jhong, Jhih-Hua, Chen, Chia-Hung, Weng, Shun-Long
הוצא לאור ב Sci Rep (2021)

Characterization and identification of lysine glutarylation based on intrinsic interdependence between positions in the substrate sites

מאת Huang, Kai-Yao, Kao, Hui-Ju, Hsu, Justin Bo-Kai, Weng, Shun-Long, Lee, Tzong-Yi
הוצא לאור ב BMC Bioinformatics (2019)

UbiSite: incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines

מאת Huang, Chien-Hsun, Su, Min-Gang, Kao, Hui-Ju, Jhong, Jhih-Hua, Weng, Shun-Long, Lee, Tzong-Yi
הוצא לאור ב BMC Syst Biol (2016)

Significant association of long non-coding RNAs HOTAIR genetic polymorphisms with cancer recurrence and patient survival in patients with uterine cervical cancer

מאת Weng, Shun-Long, Wu, Wen-Jun, Hsiao, Yi-Hsuan, Yang, Shun-Fa, Hsu, Chun-Fang, Wang, Po-Hui
הוצא לאור ב Int J Med Sci (2018)

MicroRNA-34a modulates genes involved in cellular motility and oxidative phosphorylation in neural precursors derived from human umbilical cord mesenchymal stem cells

מאת Chang, Shing-Jyh, Weng, Shun-Long, Hsieh, Jui-Yu, Wang, Tao-Yeuan, Chang, Margaret Dah-Tsyr, Wang, Hsei-Wei
יצא לאור 2011

An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs

מאת Chang, Tzu-Hao, Huang, Hsi-Yuan, Hsu, Justin Bo-Kai, Weng, Shun-Long, Horng, Jorng-Tzong, Huang, Hsien-Da
יצא לאור 2013

Large-Scale Investigation of Human TF-miRNA Relations Based on Coexpression Profiles

מאת Chien, Chia-Hung, Chiang-Hsieh, Yi-Fan, Tsou, Ann-Ping, Weng, Shun-Long, Chang, Wen-Chi, Huang, Hsien-Da
יצא לאור 2014

SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites

מאת Bui, Van-Minh, Weng, Shun-Long, Lu, Cheng-Tsung, Chang, Tzu-Hao, Weng, Julia Tzu-Ya, Lee, Tzong-Yi
הוצא לאור ב BMC Genomics (2016)

A systematic review of microRNA expression profiling studies in human gastric cancer

מאת Shrestha, Sirjana, Hsu, Sheng-Da, Huang, Wei-Yun, Huang, Hsi-Yuan, Chen, WenLiang, Weng, Shun-Long, Huang, Hsien-Da
הוצא לאור ב Cancer Med (2014)

Identifying Protein Phosphorylation Sites with Kinase Substrate Specificity on Human Viruses

מאת Bretaña, Neil Arvin, Lu, Cheng-Tsung, Chiang, Chiu-Yun, Su, Min-Gang, Huang, Kai-Yao, Lee, Tzong-Yi, Weng, Shun-Long
יצא לאור 2012

MethHC: a database of DNA methylation and gene expression in human cancer

מאת Huang, Wei-Yun, Hsu, Sheng-Da, Huang, Hsi-Yuan, Sun, Yi-Ming, Chou, Chih-Hung, Weng, Shun-Long, Huang, Hsien-Da
הוצא לאור ב Nucleic Acids Res (2014)

A two-layered machine learning method to identify protein O-GlcNAcylation sites with O-GlcNAc transferase substrate motifs

מאת Kao, Hui-Ju, Huang, Chien-Hsun, Bretaña, Neil Arvin, Lu, Cheng-Tsung, Huang, Kai-Yao, Weng, Shun-Long, Lee, Tzong-Yi
הוצא לאור ב BMC Bioinformatics (2015)

The relationships of genetic polymorphisms of the long noncoding RNA growth arrest-specific transcript 5 with uterine cervical cancer

מאת Weng, Shun-Long, Ng, Soo-Cheen, Lee, Yueh‐Chun, Hsiao, Yi-Hsuan, Hsu, Chun-Fang, Yang, Shun-Fa, Wang, Po-Hui
הוצא לאור ב Int J Med Sci (2020)

MDD-carb: a combinatorial model for the identification of protein carbonylation sites with substrate motifs

מאת Kao, Hui-Ju, Weng, Shun-Long, Huang, Kai-Yao, Kaunang, Fergie Joanda, Hsu, Justin Bo-Kai, Huang, Chien-Hsun, Lee, Tzong-Yi
הוצא לאור ב BMC Syst Biol (2017)

A panel of eight microRNAs is a good predictive parameter for triple-negative breast cancer relapse

מאת Hong, Hsiao-Chin, Chuang, Cheng-Hsun, Huang, Wei-Chih, Weng, Shun-Long, Chen, Chia-Hung, Chang, Kuang-Hsin, Liao, Kuang-Wen, Huang, Hsien-Da
הוצא לאור ב Theranostics (2020)

Investigation and identification of protein carbonylation sites based on position-specific amino acid composition and physicochemical features

מאת Weng, Shun-Long, Huang, Kai-Yao, Kaunang, Fergie Joanda, Huang, Chien-Hsun, Kao, Hui-Ju, Chang, Tzu-Hao, Wang, Hsin-Yao, Lu, Jang-Jih, Lee, Tzong-Yi
הוצא לאור ב BMC Bioinformatics (2017)

Clinical detection of human probiotics and human pathogenic bacteria by using a novel high-throughput platform based on next generation sequencing

מאת Chiu, Chih-Min, Lin, Feng-Mao, Chang, Tzu-Hao, Huang, Wei-Chih, Liang, Chao, Yang, Ting, Wu, Wei-Yun, Yang, Tzu-Ling, Weng, Shun-Long, Huang, Hsien-Da
יצא לאור 2014