An approach for clustering gene expression data with error information

Por Tjaden, Brian
Publicado em 2006

TargetRNA: a tool for predicting targets of small RNA action in bacteria

Por Tjaden, Brian
Publicado em 2008

De novo assembly of bacterial transcriptomes from RNA-seq data

Por Tjaden, Brian
Publicado no Genome Biol (2015)

GRIL-Seq, a method for identifying direct targets of bacterial small regulatory RNA by in vivo proximity ligation

Por Han, Kook, Tjaden, Brian, Lory, Stephen
Publicado no Nat Microbiol (2016)

Assessing computational tools for the discovery of small RNA genes in bacteria

Por Lu, Xiaojun, Goodrich-Blair, Heidi, Tjaden, Brian
Publicado em 2011

Identification of sRNAs expressed by the human pathogen Neisseria gonorrhoeae under disparate growth conditions

Por McClure, Ryan, Tjaden, Brian, Genco, Caroline
Publicado em 2014

TargetRNA2: identifying targets of small regulatory RNAs in bacteria

Por Kery, Mary Beth, Feldman, Monica, Livny, Jonathan, Tjaden, Brian
Publicado em 2014

A Novel Fur- and Iron-Regulated Small RNA, NrrF, Is Required for Indirect Fur-Mediated Regulation of the sdhA and sdhC Genes in Neisseria meningitidis

Por Mellin, J. R., Goswami, Sulip, Grogan, Susan, Tjaden, Brian, Genco, Caroline A.
Publicado em 2007

Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets

Por Zhang, Aixia, Schu, Daniel J., Tjaden, Brian C., Storz, Gisela, Gottesman, Susan
Publicado em 2013

Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays

Por Tjaden, Brian, Saxena, Rini Mukherjee, Stolyar, Sergey, Haynor, David R., Kolker, Eugene, Rosenow, Carsten
Publicado em 2002

Probing the sRNA regulatory landscape of P. aeruginosa: post-transcriptional control of determinants of pathogenicity and antibiotic susceptibility

Por Zhang, Yi-Fan, Han, Kook, Chandler, Courtney E., Tjaden, Brian, Ernst, Robert K., Lory, Stephen
Publicado no Mol Microbiol (2017)

Target prediction for small, noncoding RNAs in bacteria

Por Tjaden, Brian, Goodwin, Sarah S., Opdyke, Jason A., Guillier, Maude, Fu, Daniel X., Gottesman, Susan, Storz, Gisela
Publicado em 2006

Small non-coding RNAs in Streptomyces coelicolor

Por Swiercz, Julia P., Hindra, Bobek, Jan, Haiser, Henry J., Di Berardo, Christina, Tjaden, Brian, Elliot, Marie A.
Publicado em 2008

The Gonococcal Transcriptome during Infection of the Lower Genital Tract in Women

Por McClure, Ryan, Nudel, Kathleen, Massari, Paola, Tjaden, Brian, Su, Xiaohong, Rice, Peter A., Genco, Caroline A.
Publicado no PLoS One (2015)

Identification and Characterization of Serotype-Specific Variation in Group A Streptococcus Pilus Expression

Por Calfee, Gregory, Danger, Jessica L., Jain, Ira, Miller, Eric W., Sarkar, Poulomee, Tjaden, Brian, Kreikemeyer, Bernd, Sumby, Paul
Publicado no Infect Immun (2018)

Computational analysis of bacterial RNA-Seq data

Por McClure, Ryan, Balasubramanian, Divya, Sun, Yan, Bobrovskyy, Maksym, Sumby, Paul, Genco, Caroline A., Vanderpool, Carin K., Tjaden, Brian
Publicado em 2013

Initial Proteome Analysis of Model Microorganism Haemophilus influenzae Strain Rd KW20

Por Kolker, Eugene, Purvine, Samuel, Galperin, Michael Y., Stolyar, Serg, Goodlett, David R., Nesvizhskii, Alexey I., Keller, Andrew, Xie, Tao, Eng, Jimmy K., Yi, Eugene, Hood, Leroy, Picone, Alex F., Cherny, Tim, Tjaden, Brian C., Siegel, Andrew F., Reilly, Thomas J., Makarova, Kira S., Palsson, Bernhard O., Smith, Arnold L.
Publicado em 2003

The Entomopathogenic Bacterial Endosymbionts Xenorhabdus and Photorhabdus: Convergent Lifestyles from Divergent Genomes

Por Chaston, John M., Suen, Garret, Tucker, Sarah L., Andersen, Aaron W., Bhasin, Archna, Bode, Edna, Bode, Helge B., Brachmann, Alexander O., Cowles, Charles E., Cowles, Kimberly N., Darby, Creg, de Léon, Limaris, Drace, Kevin, Du, Zijin, Givaudan, Alain, Herbert Tran, Erin E., Jewell, Kelsea A., Knack, Jennifer J., Krasomil-Osterfeld, Karina C., Kukor, Ryan, Lanois, Anne, Latreille, Phil, Leimgruber, Nancy K., Lipke, Carolyn M., Liu, Renyi, Lu, Xiaojun, Martens, Eric C., Marri, Pradeep R., Médigue, Claudine, Menard, Megan L., Miller, Nancy M., Morales-Soto, Nydia, Norton, Stacie, Ogier, Jean-Claude, Orchard, Samantha S., Park, Dongjin, Park, Youngjin, Qurollo, Barbara A., Sugar, Darby Renneckar, Richards, Gregory R., Rouy, Zoé, Slominski, Brad, Slominski, Kathryn, Snyder, Holly, Tjaden, Brian C., van der Hoeven, Ransome, Welch, Roy D., Wheeler, Cathy, Xiang, Bosong, Barbazuk, Brad, Gaudriault, Sophie, Goodner, Brad, Slater, Steven C., Forst, Steven, Goldman, Barry S., Goodrich-Blair, Heidi
Publicado em 2011