Energy Landscape of All-Atom Protein-Protein Interactions Revealed by Multiscale Enhanced Sampling

Por Moritsugu, Kei, Terada, Tohru, Kidera, Akinori
Publicado em 2014

Mechanism of the Difference in the Binding Affinity of E. coli tRNA(Gln) to Glutaminyl-tRNA Synthetase Caused by Noninterface Nucleotides in Variable Loop

Por Yamasaki, Satoshi, Nakamura, Shugo, Terada, Tohru, Shimizu, Kentaro
Publicado em 2007

BUDDY-system: A web site for constructing a dataset of protein pairs between ligand-bound and unbound states

Por Morita, Mizuki, Terada, Tohru, Nakamura, Shugo, Shimizu, Kentaro
Publicado em 2011

Rapid Heme Transfer Reactions between NEAr Transporter Domains of Staphylococcus aureus: A Theoretical Study Using QM/MM and MD Simulations

Por Moriwaki, Yoshitaka, Terada, Tohru, Tsumoto, Kouhei, Shimizu, Kentaro
Publicado no PLoS One (2015)

Development of a prediction system for tail-anchored proteins

Por Shigemitsu, Shunsuke, Cao, Wei, Terada, Tohru, Shimizu, Kentaro
Publicado no BMC Bioinformatics (2016)

Electron Transport in a Dioxygenase-Ferredoxin Complex: Long Range Charge Coupling between the Rieske and Non-Heme Iron Center

Por Dawson, Wayne K., Jono, Ryota, Terada, Tohru, Shimizu, Kentaro
Publicado no PLoS One (2016)

ROKU: a novel method for identification of tissue-specific genes

Por Terada Tohru, Nakai Yuji, Ye Jiazhen, Kadota Koji, Shimizu Kentaro
Publicado em 2006-06-01

ROKU: a novel method for identification of tissue-specific genes

Por Kadota, Koji, Ye, Jiazhen, Nakai, Yuji, Terada, Tohru, Shimizu, Kentaro
Publicado em 2006

A generalized conformational energy function of DNA derived from molecular dynamics simulations

Por Yamasaki, Satoshi, Terada, Tohru, Shimizu, Kentaro, Kono, Hidetoshi, Sarai, Akinori
Publicado em 2009

A Non-canonical DNA Structure Enables Homologous Recombination in Various Genetic Systems

Por Masuda, Tokiha, Ito, Yutaka, Terada, Tohru, Shibata, Takehiko, Mikawa, Tsutomu
Publicado em 2009

Prediction of N-myristoylation modification of proteins by SVM

Por Cao, Wei, Sumikoshi, Kazuya, Nakamura, Shugo, Terada, Tohru, Shimizu, Kentaro
Publicado em 2011

A new method for evaluating the specificity of indirect readout in protein–DNA recognition

Por Yamasaki, Satoshi, Terada, Tohru, Kono, Hidetoshi, Shimizu, Kentaro, Sarai, Akinori
Publicado em 2012

Minimum Free Energy Path of Ligand-Induced Transition in Adenylate Kinase

Por Matsunaga, Yasuhiro, Fujisaki, Hiroshi, Terada, Tohru, Furuta, Tadaomi, Moritsugu, Kei, Kidera, Akinori
Publicado em 2012

Oligomerization Mechanisms of an H-NS Family Protein, Pmr, Encoded on the Plasmid pCAR1 Provide a Molecular Basis for Functions of H-NS Family Members

Por Suzuki, Chiho, Kawazuma, Kohei, Horita, Shoichiro, Terada, Tohru, Tanokura, Masaru, Okada, Kazunori, Yamane, Hisakazu, Nojiri, Hideaki
Publicado em 2014

Tyrosine Kinase Ligand-Receptor Pair Prediction by Using Support Vector Machine

Por Yarimizu, Masayuki, Wei, Cao, Komiyama, Yusuke, Ueki, Kokoro, Nakamura, Shugo, Sumikoshi, Kazuya, Terada, Tohru, Shimizu, Kentaro
Publicado no Adv Bioinformatics (2015)

Development of a protein–ligand-binding site prediction method based on interaction energy and sequence conservation

Por Tsujikawa, Hiroto, Sato, Kenta, Wei, Cao, Saad, Gul, Sumikoshi, Kazuya, Nakamura, Shugo, Terada, Tohru, Shimizu, Kentaro
Publicado no J Struct Funct Genomics (2016)

Selective binding of antimicrobial porphyrins to the heme-receptor IsdH-NEAT3 of Staphylococcus aureus

Por Vu, Nhuan T, Moriwaki, Yoshitaka, Caaveiro, Jose M M, Terada, Tohru, Tsutsumi, Hiroshi, Hamachi, Itaru, Shimizu, Kentaro, Tsumoto, Kouhei
Publicado em 2013

Crystal Structure of the Terminal Oxygenase Component of Cumene Dioxygenase from Pseudomonas fluorescens IP01

Por Dong, Xuesong, Fushinobu, Shinya, Fukuda, Eriko, Terada, Tohru, Nakamura, Shugo, Shimizu, Kentaro, Nojiri, Hideaki, Omori, Toshio, Shoun, Hirofumi, Wakagi, Takayoshi
Publicado em 2005

Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines

Por Someya, Seizi, Kakuta, Masanori, Morita, Mizuki, Sumikoshi, Kazuya, Cao, Wei, Ge, Zhenyi, Hirose, Osamu, Nakamura, Shugo, Terada, Tohru, Shimizu, Kentaro
Publicado em 2010

HPLC Retention time prediction for metabolome analysi

Por Hagiwara, Takashi, Saito, Seiji, Ujiie, Yoshifumi, Imai, Kensaku, Kakuta, Masanori, Kadota, Koji, Terada, Tohru, Sumikoshi, Kazuya, Shimizu, Kentaro, Nishi, Tatsunari
Publicado em 2010