Microbial Contamination in Next Generation Sequencing: Implications for Sequence-Based Analysis of Clinical Samples

par Strong, Michael J., Xu, Guorong, Morici, Lisa, Splinter Bon-Durant, Sandra, Baddoo, Melody, Lin, Zhen, Fewell, Claire, Taylor, Christopher M., Flemington, Erik K.
Publié dans PLoS Pathog (2014)

Influence of Populus Genotype on Gene Expression by the Wood Decay Fungus Phanerochaete chrysosporium

par Gaskell, Jill, Marty, Amber, Mozuch, Michael, Kersten, Philip J., Splinter BonDurant, Sandra, Sabat, Grzegorz, Azarpira, Ali, Ralph, John, Skyba, Oleksandr, Mansfield, Shawn D., Blanchette, Robert A., Cullen, Dan
Publié 2014

Significant Alteration of Gene Expression in Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium by Plant Species

par Vanden Wymelenberg, Amber, Gaskell, Jill, Mozuch, Michael, Splinter BonDurant, Sandra, Sabat, Grzegorz, Ralph, John, Skyba, Oleksandr, Mansfield, Shawn D., Blanchette, Robert A., Grigoriev, Igor V., Kersten, Philip J., Cullen, Dan
Publié 2011

Global Bidirectional Transcription of the Epstein-Barr Virus Genome during Reactivation

par O'Grady, Tina, Cao, Subing, Strong, Michael J., Concha, Monica, Wang, Xia, Splinter BonDurant, Sandra, Adams, Marie, Baddoo, Melody, Srivastav, Sudesh K., Lin, Zhen, Fewell, Claire, Yin, Qinyan, Flemington, Erik K.
Publié 2014

Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis

par Wier, Andrew M., Nyholm, Spencer V., Mandel, Mark J., Massengo-Tiassé, R. Prisca, Schaefer, Amy L., Koroleva, Irina, Splinter-BonDurant, Sandra, Brown, Bartley, Manzella, Liliana, Snir, Einat, Almabrazi, Hakeem, Scheetz, Todd E., de Fatima Bonaldo, Maria, Casavant, Thomas L., Soares, M. Bento, Cronan, John E., Reed, Jennifer L., Ruby, Edward G., McFall-Ngai, Margaret J.
Publié 2010

Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood

par Hori, Chiaki, Ishida, Takuya, Igarashi, Kiyohiko, Samejima, Masahiro, Suzuki, Hitoshi, Master, Emma, Ferreira, Patricia, Ruiz-Dueñas, Francisco J., Held, Benjamin, Canessa, Paulo, Larrondo, Luis F., Schmoll, Monika, Druzhinina, Irina S., Kubicek, Christian P., Gaskell, Jill A., Kersten, Phil, St. John, Franz, Glasner, Jeremy, Sabat, Grzegorz, Splinter BonDurant, Sandra, Syed, Khajamohiddin, Yadav, Jagjit, Mgbeahuruike, Anthony C., Kovalchuk, Andriy, Asiegbu, Fred O., Lackner, Gerald, Hoffmeister, Dirk, Rencoret, Jorge, Gutiérrez, Ana, Sun, Hui, Lindquist, Erika, Barry, Kerrie, Riley, Robert, Grigoriev, Igor V., Henrissat, Bernard, Kües, Ursula, Berka, Randy M., Martínez, Angel T., Covert, Sarah F., Blanchette, Robert A., Cullen, Daniel
Publié dans PLoS Genet (2014)

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion

par Martinez, Diego, Challacombe, Jean, Morgenstern, Ingo, Hibbett, David, Schmoll, Monika, Kubicek, Christian P., Ferreira, Patricia, Ruiz-Duenas, Francisco J., Martinez, Angel T., Kersten, Phil, Hammel, Kenneth E., Vanden Wymelenberg, Amber, Gaskell, Jill, Lindquist, Erika, Sabat, Grzegorz, Splinter BonDurant, Sandra, Larrondo, Luis F., Canessa, Paulo, Vicuna, Rafael, Yadav, Jagjit, Doddapaneni, Harshavardhan, Subramanian, Venkataramanan, Pisabarro, Antonio G., Lavín, José L., Oguiza, José A., Master, Emma, Henrissat, Bernard, Coutinho, Pedro M., Harris, Paul, Magnuson, Jon Karl, Baker, Scott E., Bruno, Kenneth, Kenealy, William, Hoegger, Patrik J., Kües, Ursula, Ramaiya, Preethi, Lucas, Susan, Salamov, Asaf, Shapiro, Harris, Tu, Hank, Chee, Christine L., Misra, Monica, Xie, Gary, Teter, Sarah, Yaver, Debbie, James, Tim, Mokrejs, Martin, Pospisek, Martin, Grigoriev, Igor V., Brettin, Thomas, Rokhsar, Dan, Berka, Randy, Cullen, Dan
Publié 2009

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

par Fernandez-Fueyo, Elena, Ruiz-Dueñas, Francisco J., Ferreira, Patricia, Floudas, Dimitrios, Hibbett, David S., Canessa, Paulo, Larrondo, Luis F., James, Tim Y., Seelenfreund, Daniela, Lobos, Sergio, Polanco, Rubén, Tello, Mario, Honda, Yoichi, Watanabe, Takahito, Watanabe, Takashi, Ryu, Jae San, Kubicek, Christian P., Schmoll, Monika, Gaskell, Jill, Hammel, Kenneth E., St. John, Franz J., Vanden Wymelenberg, Amber, Sabat, Grzegorz, Splinter BonDurant, Sandra, Syed, Khajamohiddin, Yadav, Jagjit S., Doddapaneni, Harshavardhan, Subramanian, Venkataramanan, Lavín, José L., Oguiza, José A., Perez, Gumer, Pisabarro, Antonio G., Ramirez, Lucia, Santoyo, Francisco, Master, Emma, Coutinho, Pedro M., Henrissat, Bernard, Lombard, Vincent, Magnuson, Jon Karl, Kües, Ursula, Hori, Chiaki, Igarashi, Kiyohiko, Samejima, Masahiro, Held, Benjamin W., Barry, Kerrie W., LaButti, Kurt M., Lapidus, Alla, Lindquist, Erika A., Lucas, Susan M., Riley, Robert, Salamov, Asaf A., Hoffmeister, Dirk, Schwenk, Daniel, Hadar, Yitzhak, Yarden, Oded, de Vries, Ronald P., Wiebenga, Ad, Stenlid, Jan, Eastwood, Daniel, Grigoriev, Igor V., Berka, Randy M., Blanchette, Robert A., Kersten, Phil, Martinez, Angel T., Vicuna, Rafael, Cullen, Dan
Publié 2012