Adaptations to High Salt in a Halophilic Protist: Differential Expression and Gene Acquisitions through Duplications and Gene Transfers

door Harding, Tommy, Roger, Andrew J., Simpson, Alastair G. B.
Gepubliceerd in Front Microbiol (2017)

Osmoadaptative Strategy and Its Molecular Signature in Obligately Halophilic Heterotrophic Protists

door Harding, Tommy, Brown, Matthew W., Simpson, Alastair G.B., Roger, Andrew J.
Gepubliceerd in Genome Biol Evol (2016)

How Many Species Are There on Earth and in the Ocean?

door Mora, Camilo, Tittensor, Derek P., Adl, Sina, Simpson, Alastair G. B., Worm, Boris
Gepubliceerd in 2011

Mitochondrial Genome Evolution and a Novel RNA Editing System in Deep-Branching Heteroloboseids

door Yang, Jiwon, Harding, Tommy, Kamikawa, Ryoma, Simpson, Alastair G.B., Roger, Andrew J.
Gepubliceerd in Genome Biol Evol (2017)

Combined morphological and phylogenomic re-examination of malawimonads, a critical taxon for inferring the evolutionary history of eukaryotes

door Heiss, Aaron A., Kolisko, Martin, Ekelund, Fleming, Brown, Matthew W., Roger, Andrew J., Simpson, Alastair G. B.
Gepubliceerd in R Soc Open Sci (2018)

Evolutionary History of Mitochondrial Genomes in Discoba, Including the Extreme Halophile Pleurostomum flabellatum (Heterolobosea)

door Ettahi, Khaoula, Lhee, Duckhyun, Sung, Ji Yeon, Simpson, Alastair G B, Park, Jong Soo, Yoon, Hwan Su
Gepubliceerd in Genome Biol Evol (2020)

Ecological and evolutionary patterns in the enigmatic protist genus Percolomonas (Heterolobosea; Discoba) from diverse habitats

door Tikhonenkov, Denis V., Jhin, Soo Hwan, Eglit, Yana, Miller, Kai, Plotnikov, Andrey, Simpson, Alastair G. B., Park, Jong Soo
Gepubliceerd in PLoS One (2019)

A single-cell genome reveals diplonemid-like ancestry of kinetoplastid mitochondrial gene structure

door Wideman, Jeremy G., Lax, Gordon, Leonard, Guy, Milner, David S., Rodríguez-Martínez, Raquel, Simpson, Alastair G. B., Richards, Thomas A.
Gepubliceerd in Philos Trans R Soc Lond B Biol Sci (2019)

Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic “supergroups”

door Hampl, Vladimir, Hug, Laura, Leigh, Jessica W., Dacks, Joel B., Lang, B. Franz, Simpson, Alastair G. B., Roger, Andrew J.
Gepubliceerd in 2009

On the reversibility of parasitism: adaptation to a free-living lifestyle via gene acquisitions in the diplomonad Trepomonas sp. PC1

door Xu, Feifei, Jerlström-Hultqvist, Jon, Kolisko, Martin, Simpson, Alastair G. B., Roger, Andrew J., Svärd, Staffan G., Andersson, Jan O.
Gepubliceerd in BMC Biol (2016)

Erratum to: On the reversibility of parasitism: adaptation to a free-living lifestyle via gene acquisitions in the diplomonad Trepomonas sp. PC1

door Xu, Feifei, Jerlström-Hultqvist, Jon, Kolisko, Martin, Simpson, Alastair G. B., Roger, Andrew J., Svärd, Staffan G., Andersson, Jan O.
Gepubliceerd in BMC Biol (2016)

Combined cultivation and single-cell approaches to the phylogenomics of nucleariid amoebae, close relatives of fungi

door Galindo, Luis Javier, Torruella, Guifré, Moreira, David, Eglit, Yana, Simpson, Alastair G. B., Völcker, Eckhard, Clauß, Steffen, López-García, Purificación
Gepubliceerd in Philos Trans R Soc Lond B Biol Sci (2019)

Ancestral and Derived Protein Import Pathways in the Mitochondrion of Reclinomonas americana

door Tong, Janette, Dolezal, Pavel, Selkrig, Joel, Crawford, Simon, Simpson, Alastair G.B., Noinaj, Nicholas, Buchanan, Susan K., Gabriel, Kipros, Lithgow, Trevor
Gepubliceerd in 2011

Phylogenomics demonstrates that breviate flagellates are related to opisthokonts and apusomonads

door Brown, Matthew W., Sharpe, Susan C., Silberman, Jeffrey D., Heiss, Aaron A., Lang, B. Franz, Simpson, Alastair G. B., Roger, Andrew J.
Gepubliceerd in 2013

Barthelonids represent a deep-branching metamonad clade with mitochondrion-related organelles predicted to generate no ATP

door Yazaki, Euki, Kume, Keitaro, Shiratori, Takashi, Eglit, Yana, Tanifuji, Goro, Harada, Ryo, Simpson, Alastair G. B., Ishida, Ken-ichiro, Hashimoto, Tetsuo, Inagaki, Yuji
Gepubliceerd in Proc Biol Sci (2020)

Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes

door Novák, Lukáš, Zubáčová, Zuzana, Karnkowska, Anna, Kolisko, Martin, Hroudová, Miluše, Stairs, Courtney W., Simpson, Alastair G. B., Keeling, Patrick J., Roger, Andrew J., Čepička, Ivan, Hampl, Vladimír
Gepubliceerd in BMC Evol Biol (2016)

Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group

door Brown, Matthew W, Heiss, Aaron A, Kamikawa, Ryoma, Inagaki, Yuji, Yabuki, Akinori, Tice, Alexander K, Shiratori, Takashi, Ishida, Ken-Ichiro, Hashimoto, Tetsuo, Simpson, Alastair G B, Roger, Andrew J
Gepubliceerd in Genome Biol Evol (2018)

EukRef-excavates: seven curated SSU ribosomal RNA gene databases

door Kolisko, Martin, Flegontova, Olga, Karnkowska, Anna, Lax, Gordon, Maritz, Julia M, Pánek, Tomáš, Táborský, Petr, Carlton, Jane M, Čepička, Ivan, Horák, Aleš, Lukeš, Julius, Simpson, Alastair G B, Tai, Vera
Gepubliceerd in Database (Oxford) (2020)

Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes

door Leger, Michelle M., Kolisko, Martin, Kamikawa, Ryoma, Stairs, Courtney W., Kume, Keitaro, Čepička, Ivan, Silberman, Jeffrey D., Andersson, Jan O., Xu, Feifei, Yabuki, Akinori, Eme, Laura, Zhang, Qianqian, Takishita, Kiyotaka, Inagaki, Yuji, Simpson, Alastair G. B., Hashimoto, Tetsuo, Roger, Andrew J.
Gepubliceerd in Nat Ecol Evol (2017)

UniEuk: Time to Speak a Common Language in Protistology!

door Berney, Cédric, Ciuprina, Andreea, Bender, Sara, Brodie, Juliet, Edgcomb, Virginia, Kim, Eunsoo, Rajan, Jeena, Parfrey, Laura Wegener, Adl, Sina, Audic, Stéphane, Bass, David, Caron, David A., Cochrane, Guy, Czech, Lucas, Dunthorn, Micah, Geisen, Stefan, Glöckner, Frank Oliver, Mahé, Frédéric, Quast, Christian, Kaye, Jonathan Z., Simpson, Alastair G. B., Stamatakis, Alexandros, del Campo, Javier, Yilmaz, Pelin, de Vargas, Colomban
Gepubliceerd in J Eukaryot Microbiol (2017)