Review: Genomic era analyses of RNA secondary structure and RNA-binding proteins reveal their significance to post-transcriptional regulation in plants

av Silverman, Ian M., Li, Fan, Gregory, Brian D.
Publicerad 2013

Cytoplasmic poly(A) binding protein-1 binds to genomically encoded sequences within mammalian mRNAs

av Kini, Hemant K., Silverman, Ian M., Ji, Xinjun, Gregory, Brian D., Liebhaber, Stephen A.
I publikationen RNA (2016)

Evaluating the Impact of Sequencing Depth on Transcriptome Profiling in Human Adipose

av Liu, Yichuan, Ferguson, Jane F., Xue, Chenyi, Silverman, Ian M., Gregory, Brian, Reilly, Muredach P., Li, Mingyao
Publicerad 2013

RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome

av Silverman, Ian M, Li, Fan, Alexander, Anissa, Goff, Loyal, Trapnell, Cole, Rinn, John L, Gregory, Brian D
Publicerad 2014

Chemical Modifications Mark Alternatively Spliced and Uncapped Messenger RNAs in Arabidopsis

av Vandivier, Lee E., Campos, Rafael, Kuksa, Pavel P., Silverman, Ian M., Wang, Li-San, Gregory, Brian D.
I publikationen Plant Cell (2015)

A comprehensive database of high-throughput sequencing-based RNA secondary structure probing data (Structure Surfer)

av Berkowitz, Nathan D., Silverman, Ian M., Childress, Daniel M., Kazan, Hilal, Wang, Li-San, Gregory, Brian D.
I publikationen BMC Bioinformatics (2016)

Terpene metabolic engineering via nuclear or chloroplast genomes profoundly and globally impacts off‐target pathways through metabolite signalling

av Pasoreck, Elise K., Su, Jin, Silverman, Ian M., Gosai, Sager J., Gregory, Brian D., Yuan, Joshua S., Daniell, Henry
I publikationen Plant Biotechnol J (2016)

HAMR: high-throughput annotation of modified ribonucleotides

av Ryvkin, Paul, Leung, Yuk Yee, Silverman, Ian M., Childress, Micah, Valladares, Otto, Dragomir, Isabelle, Gregory, Brian D., Wang, Li-San
Publicerad 2013

Dynamic changes in RNA–protein interactions and RNA secondary structure in mammalian erythropoiesis

av Shan, Mengge, Ji, Xinjun, Janssen, Kevin, Silverman, Ian M, Humenik, Jesse, Garcia, Ben A, Liebhaber, Stephen A, Gregory, Brian D
I publikationen Life Sci Alliance (2021)

Poly(C)-Binding Protein Pcbp2 Enables Differentiation of Definitive Erythropoiesis by Directing Functional Splicing of the Runx1 Transcript

av Ghanem, Louis R., Kromer, Andrew, Silverman, Ian M., Ji, Xinjun, Gazzara, Matthew, Nguyen, Nhu, Aguilar, Gabrielle, Martinelli, Massimo, Barash, Yoseph, Liebhaber, Stephen A.
I publikationen Mol Cell Biol (2018)

The Poly(C) Binding Protein Pcbp2 and Its Retrotransposed Derivative Pcbp1 Are Independently Essential to Mouse Development

av Ghanem, Louis R., Kromer, Andrew, Silverman, Ian M., Chatterji, Priya, Traxler, Elizabeth, Penzo-Mendez, Alfredo, Weiss, Mitchell J., Stanger, Ben Z., Liebhaber, Stephen A.
I publikationen Mol Cell Biol (2016)

Impact of poly(A)-tail G-content on Arabidopsis PAB binding and their role in enhancing translational efficiency

av Zhao, Taolan, Huan, Qing, Sun, Jing, Liu, Chunyan, Hou, Xiuli, Yu, Xiang, Silverman, Ian M., Zhang, Yi, Gregory, Brian D., Liu, Chun-Ming, Qian, Wenfeng, Cao, Xiaofeng
I publikationen Genome Biol (2019)

Global Analysis of the RNA-Protein Interaction and RNA Secondary Structure Landscapes of the Arabidopsis Nucleus

av Gosai, Sager J., Foley, Shawn W., Wang, Dongxue, Silverman, Ian M., Selamoglu, Nur, Nelson, Andrew D.L., Beilstein, Mark A., Daldal, Fevzi, Deal, Roger B., Gregory, Brian D.
I publikationen Mol Cell (2014)

Tissue-specific RNA-Seq in Human Evoked Inflammation Identifies Blood and Adipose LincRNA Signatures of Cardio-metabolic Diseases

av Liu, Yichuan, Ferguson, Jane F., Xue, Chenyi, Ballantyne, Rachel L., Silverman, Ian M., Gosai, Sager J., Serfecz, Jacquelyn, Morley, Michael P., Gregory, Brian D., Li, Mingyao, Reilly, Muredach P.
Publicerad 2014

Loss of NAD homeostasis leads to progressive and reversible degeneration of skeletal muscle

av Frederick, David W., Loro, Emanuele, Liu, Ling, Davila, Antonio, Chellappa, Karthikeyani, Silverman, Ian M., Quinn, William J., Gosai, Sager J., Tichy, Elisia D., Davis, James G., Mourkioti, Foteini, Gregory, Brian D., Dellinger, Ryan W., Redpath, Philip, Migaud, Marie E., Nakamaru-Ogiso, Eiko, Rabinowitz, Joshua D., Khurana, Tejvir S., Baur, Joseph A.
I publikationen Cell Metab (2016)

Genomic Analysis of Posterior Fossa Meningioma Demonstrates Frequent AKT1 E17K Mutations in Foramen Magnum Meningiomas

av Williams, Sally R., Juratli, Tareq A., Castro, Brandyn A., Lazaro, Tyler T., Gill, Corey M., Nayyar, Naema, Strickland, Matthew R., Babinski, Melanie, Johnstone, Sarah E., Frosch, Matthew P., Silverman, Ian M., Ely, Heather A., Kaplan, Alexander B., D'Andrea, Megan R., Bihun, Ivanna V., Hoang, Kaitlin, Batchelor, Emily, Christiansen, Jason, Cahill, Daniel P., Barker, Frederick G., Brastianos, Priscilla K.
I publikationen J Neurol Surg B Skull Base (2019)

Intratumoral heterogeneity and TERT promoter mutations in progressive/higher-grade meningiomas

av Juratli, Tareq A., Thiede, Christian, Koerner, Mara V.A., Tummala, Shilpa S., Daubner, Dirk, Shankar, Ganesh M., Williams, Erik A., Martinez-Lage, Maria, Soucek, Silke, Robel, Katja, Penson, Tristan, Krause, Mechthild, Appold, Steffen, Meinhardt, Matthias, Pinzer, Thomas, Miller, Julie J., Krex, Dietmar, Ely, Heather A., Silverman, Ian M., Christiansen, Jason, Schackert, Gabriele, Wakimoto, Hiroaki, Kirsch, Matthias, Brastianos, Priscilla K., Cahill, Daniel P.
I publikationen Oncotarget (2017)