Review: Genomic era analyses of RNA secondary structure and RNA-binding proteins reveal their significance to post-transcriptional regulation in plants

Por Silverman, Ian M., Li, Fan, Gregory, Brian D.
Publicado em 2013

Cytoplasmic poly(A) binding protein-1 binds to genomically encoded sequences within mammalian mRNAs

Por Kini, Hemant K., Silverman, Ian M., Ji, Xinjun, Gregory, Brian D., Liebhaber, Stephen A.
Publicado no RNA (2016)

Evaluating the Impact of Sequencing Depth on Transcriptome Profiling in Human Adipose

Por Liu, Yichuan, Ferguson, Jane F., Xue, Chenyi, Silverman, Ian M., Gregory, Brian, Reilly, Muredach P., Li, Mingyao
Publicado em 2013

RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome

Por Silverman, Ian M, Li, Fan, Alexander, Anissa, Goff, Loyal, Trapnell, Cole, Rinn, John L, Gregory, Brian D
Publicado em 2014

Chemical Modifications Mark Alternatively Spliced and Uncapped Messenger RNAs in Arabidopsis

Por Vandivier, Lee E., Campos, Rafael, Kuksa, Pavel P., Silverman, Ian M., Wang, Li-San, Gregory, Brian D.
Publicado no Plant Cell (2015)

A comprehensive database of high-throughput sequencing-based RNA secondary structure probing data (Structure Surfer)

Por Berkowitz, Nathan D., Silverman, Ian M., Childress, Daniel M., Kazan, Hilal, Wang, Li-San, Gregory, Brian D.
Publicado no BMC Bioinformatics (2016)

Terpene metabolic engineering via nuclear or chloroplast genomes profoundly and globally impacts off‐target pathways through metabolite signalling

Por Pasoreck, Elise K., Su, Jin, Silverman, Ian M., Gosai, Sager J., Gregory, Brian D., Yuan, Joshua S., Daniell, Henry
Publicado no Plant Biotechnol J (2016)

HAMR: high-throughput annotation of modified ribonucleotides

Por Ryvkin, Paul, Leung, Yuk Yee, Silverman, Ian M., Childress, Micah, Valladares, Otto, Dragomir, Isabelle, Gregory, Brian D., Wang, Li-San
Publicado em 2013

Poly(C)-Binding Protein Pcbp2 Enables Differentiation of Definitive Erythropoiesis by Directing Functional Splicing of the Runx1 Transcript

Por Ghanem, Louis R., Kromer, Andrew, Silverman, Ian M., Ji, Xinjun, Gazzara, Matthew, Nguyen, Nhu, Aguilar, Gabrielle, Martinelli, Massimo, Barash, Yoseph, Liebhaber, Stephen A.
Publicado no Mol Cell Biol (2018)

The Poly(C) Binding Protein Pcbp2 and Its Retrotransposed Derivative Pcbp1 Are Independently Essential to Mouse Development

Por Ghanem, Louis R., Kromer, Andrew, Silverman, Ian M., Chatterji, Priya, Traxler, Elizabeth, Penzo-Mendez, Alfredo, Weiss, Mitchell J., Stanger, Ben Z., Liebhaber, Stephen A.
Publicado no Mol Cell Biol (2016)

Impact of poly(A)-tail G-content on Arabidopsis PAB binding and their role in enhancing translational efficiency

Por Zhao, Taolan, Huan, Qing, Sun, Jing, Liu, Chunyan, Hou, Xiuli, Yu, Xiang, Silverman, Ian M., Zhang, Yi, Gregory, Brian D., Liu, Chun-Ming, Qian, Wenfeng, Cao, Xiaofeng
Publicado no Genome Biol (2019)

Global Analysis of the RNA-Protein Interaction and RNA Secondary Structure Landscapes of the Arabidopsis Nucleus

Por Gosai, Sager J., Foley, Shawn W., Wang, Dongxue, Silverman, Ian M., Selamoglu, Nur, Nelson, Andrew D.L., Beilstein, Mark A., Daldal, Fevzi, Deal, Roger B., Gregory, Brian D.
Publicado no Mol Cell (2014)

Tissue-specific RNA-Seq in Human Evoked Inflammation Identifies Blood and Adipose LincRNA Signatures of Cardio-metabolic Diseases

Por Liu, Yichuan, Ferguson, Jane F., Xue, Chenyi, Ballantyne, Rachel L., Silverman, Ian M., Gosai, Sager J., Serfecz, Jacquelyn, Morley, Michael P., Gregory, Brian D., Li, Mingyao, Reilly, Muredach P.
Publicado em 2014

Loss of NAD homeostasis leads to progressive and reversible degeneration of skeletal muscle

Por Frederick, David W., Loro, Emanuele, Liu, Ling, Davila, Antonio, Chellappa, Karthikeyani, Silverman, Ian M., Quinn, William J., Gosai, Sager J., Tichy, Elisia D., Davis, James G., Mourkioti, Foteini, Gregory, Brian D., Dellinger, Ryan W., Redpath, Philip, Migaud, Marie E., Nakamaru-Ogiso, Eiko, Rabinowitz, Joshua D., Khurana, Tejvir S., Baur, Joseph A.
Publicado no Cell Metab (2016)

Genomic Analysis of Posterior Fossa Meningioma Demonstrates Frequent AKT1 E17K Mutations in Foramen Magnum Meningiomas

Por Williams, Sally R., Juratli, Tareq A., Castro, Brandyn A., Lazaro, Tyler T., Gill, Corey M., Nayyar, Naema, Strickland, Matthew R., Babinski, Melanie, Johnstone, Sarah E., Frosch, Matthew P., Silverman, Ian M., Ely, Heather A., Kaplan, Alexander B., D'Andrea, Megan R., Bihun, Ivanna V., Hoang, Kaitlin, Batchelor, Emily, Christiansen, Jason, Cahill, Daniel P., Barker, Frederick G., Brastianos, Priscilla K.
Publicado no J Neurol Surg B Skull Base (2019)

Intratumoral heterogeneity and TERT promoter mutations in progressive/higher-grade meningiomas

Por Juratli, Tareq A., Thiede, Christian, Koerner, Mara V.A., Tummala, Shilpa S., Daubner, Dirk, Shankar, Ganesh M., Williams, Erik A., Martinez-Lage, Maria, Soucek, Silke, Robel, Katja, Penson, Tristan, Krause, Mechthild, Appold, Steffen, Meinhardt, Matthias, Pinzer, Thomas, Miller, Julie J., Krex, Dietmar, Ely, Heather A., Silverman, Ian M., Christiansen, Jason, Schackert, Gabriele, Wakimoto, Hiroaki, Kirsch, Matthias, Brastianos, Priscilla K., Cahill, Daniel P.
Publicado no Oncotarget (2017)