A phylogenomic approach to microbial evolution

Por Sicheritz-Pontén, Thomas, Andersson, Siv G. E.
Publicado em 2001

GenePublisher: automated analysis of DNA microarray data

Por Knudsen, Steen, Workman, Christopher, Sicheritz-Ponten, Thomas, Friis, Carsten
Publicado em 2003

Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data

Por Al-Nakeeb, Kosai, Petersen, Thomas Nordahl, Sicheritz-Pontén, Thomas
Publicado no BMC Bioinformatics (2017)

Genomic and metagenomic signatures of giant viruses are ubiquitous in water samples from sewage, inland lake, waste water treatment plant, and municipal water supply in Mumbai, Ind...

Por Chatterjee, Anirvan, Sicheritz-Pontén, Thomas, Yadav, Rajesh, Kondabagil, Kiran
Publicado no Sci Rep (2019)

Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses

Por Zepeda Mendoza, Marie Lisandra, Sicheritz-Pontén, Thomas, Gilbert, M. Thomas P.
Publicado no Brief Bioinform (2015)

Microbial community structure of Arctic multiyear sea ice and surface seawater by 454 sequencing of the 16S RNA gene

Por Bowman, Jeff S, Rasmussen, Simon, Blom, Nikolaj, Deming, Jody W, Rysgaard, Søren, Sicheritz-Ponten, Thomas
Publicado em 2012

Metagenomic analysis of rapid gravity sand filter microbial communities suggests novel physiology of Nitrospira spp.

Por Palomo, Alejandro, Jane Fowler, S, Gülay, Arda, Rasmussen, Simon, Sicheritz-Ponten, Thomas, Smets, Barth F
Publicado no ISME J (2016)

Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes

Por Alsmark, Cecilia, Foster, Peter G, Sicheritz-Ponten, Thomas, Nakjang, Sirintra, Martin Embley, T, Hirt, Robert P
Publicado em 2013

Genome Sequence of Talaromyces atroroseus, Which Produces Red Colorants for the Food Industry

Por Thrane, Ulf, Rasmussen, Kasper Bøwig, Petersen, Bent, Rasmussen, Simon, Sicheritz-Pontén, Thomas, Mortensen, Uffe Hasbro
Publicado no Genome Announc (2017)

Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira

Por Palomo, Alejandro, Pedersen, Anders G., Fowler, S. Jane, Dechesne, Arnaud, Sicheritz-Pontén, Thomas, Smets, Barth F.
Publicado no ISME J (2018)

Microbiota in foods from Inuit traditional hunting

Por Hauptmann, Aviaja L., Paulová, Petronela, Hansen, Lars Hestbjerg, Sicheritz-Pontén, Thomas, Mulvad, Gert, Nielsen, Dennis S.
Publicado no PLoS One (2020)

The chemical interactome space between the human host and the genetically defined gut metabotypes

Por Jacobsen, Ulrik Plesner, Nielsen, Henrik Bjørn, Hildebrand, Falk, Raes, Jeroen, Sicheritz-Ponten, Thomas, Kouskoumvekaki, Irene, Panagiotou, Gianni
Publicado em 2013

Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples

Por Hasman, Henrik, Saputra, Dhany, Sicheritz-Ponten, Thomas, Lund, Ole, Svendsen, Christina Aaby, Frimodt-Møller, Niels, Aarestrup, Frank M.
Publicado em 2014

Choice of bacterial DNA extraction method from fecal material influences community structure as evaluated by metagenomic analysis

Por Wesolowska-Andersen, Agata, Bahl, Martin Iain, Carvalho, Vera, Kristiansen, Karsten, Sicheritz-Pontén, Thomas, Gupta, Ramneek, Licht, Tine Rask
Publicado em 2014

Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples

Por Hasman, Henrik, Saputra, Dhany, Sicheritz-Ponten, Thomas, Lund, Ole, Svendsen, Christina Aaby, Frimodt-Møller, Niels, Aarestrup, Frank M.
Publicado em 2014

Transcriptome and Genome Size Analysis of the Venus Flytrap

Por Jensen, Michael Krogh, Vogt, Josef Korbinian, Bressendorff, Simon, Seguin-Orlando, Andaine, Petersen, Morten, Sicheritz-Pontén, Thomas, Mundy, John
Publicado no PLoS One (2015)

Upstream Freshwater and Terrestrial Sources Are Differentially Reflected in the Bacterial Community Structure along a Small Arctic River and Its Estuary

Por Hauptmann, Aviaja L., Markussen, Thor N., Stibal, Marek, Olsen, Nikoline S., Elberling, Bo, Bælum, Jacob, Sicheritz-Pontén, Thomas, Jacobsen, Carsten S.
Publicado no Front Microbiol (2016)

Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins

Por Via Allegra, Linding Rune, Gemünd Christine, Cameron Scott, Diella Francesca, Kuster Bernhard, Sicheritz-Pontén Thomas, Blom Nikolaj, Gibson Toby J
Publicado em 2004-06-01

Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome

Por Jensen, Lars Juhl, Skovgaard, Marie, Sicheritz-Pontén, Thomas, Jørgensen, Merete Kjær, Lundegaard, Christiane, Pedersen, Corinna Cavan, Petersen, Nanna, Ussery, David
Publicado em 2003

Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins

Por Diella, Francesca, Cameron, Scott, Gemünd, Christine, Linding, Rune, Via, Allegra, Kuster, Bernhard, Sicheritz-Pontén, Thomas, Blom, Nikolaj, Gibson, Toby J
Publicado em 2004