RSRE: RNA structural robustness evaluator

Por Shu, Wenjie, Bo, Xiaochen, Zheng, Zhiqiang, Wang, Shengqi
Publicado em 2007

A novel representation of RNA secondary structure based on element-contact graphs

Por Shu, Wenjie, Bo, Xiaochen, Zheng, Zhiqiang, Wang, Shengqi
Publicado em 2008

Genome-wide analysis of the relationships between DNaseI HS, histone modifications and gene expression reveals distinct modes of chromatin domains

Por Shu, Wenjie, Chen, Hebing, Bo, Xiaochen, Wang, Shengqi
Publicado em 2011

EvoRSR: an integrated system for exploring evolution of RNA structural robustness

Por Ni Ming, Shu Wenjie, Bo Xiaochen, Zheng Zhiqiang, Wang Shengqi
Publicado em 2009-08-01

In silico genetic robustness analysis of microRNA secondary structures: potential evidence of congruent evolution in microRNA

Por Shu, Wenjie, Bo, Xiaochen, Ni, Ming, Zheng, Zhiqiang, Wang, Shengqi
Publicado em 2007

EvoRSR: an integrated system for exploring evolution of RNA structural robustness

Por Shu, Wenjie, Ni, Ming, Bo, Xiaochen, Zheng, Zhiqiang, Wang, Shengqi
Publicado em 2009

Correlation between sequence conservation and structural thermodynamics of microRNA precursors from human, mouse, and chicken genomes

Por Ni, Ming, Shu, Wenjie, Bo, Xiaochen, Wang, Shengqi, Li, Songgang
Publicado em 2010

Comprehensive Identification and Annotation of Cell Type-Specific and Ubiquitous CTCF-Binding Sites in the Human Genome

Por Chen, Hebing, Tian, Yao, Shu, Wenjie, Bo, Xiaochen, Wang, Shengqi
Publicado em 2012

PEDLA: predicting enhancers with a deep learning-based algorithmic framework

Por Liu, Feng, Li, Hao, Ren, Chao, Bo, Xiaochen, Shu, Wenjie
Publicado no Sci Rep (2016)

Genome-wide identification and characterisation of HOT regions in the human genome

Por Li, Hao, Liu, Feng, Ren, Chao, Bo, Xiaochen, Shu, Wenjie
Publicado no BMC Genomics (2016)

Differential roles of Stella in the modulation of DNA methylation during oocyte and zygotic development

Por Han, Longsen, Ren, Chao, Zhang, Jun, Shu, Wenjie, Wang, Qiang
Publicado no Cell Discov (2019)

Lnc2Catlas: an atlas of long noncoding RNAs associated with risk of cancers

Por Ren, Chao, An, Gaole, Zhao, Chenghui, Ouyang, Zhangyi, Bo, Xiaochen, Shu, Wenjie
Publicado no Sci Rep (2018)

The landscape of the A-to-I RNA editome from 462 human genomes

Por Ouyang, Zhangyi, Ren, Chao, Liu, Feng, An, Gaole, Bo, Xiaochen, Shu, Wenjie
Publicado no Sci Rep (2018)

Selection of antisense oligonucleotides based on multiple predicted target mRNA structures

Por Bo, Xiaochen, Lou, Shaoke, Sun, Daochun, Shu, Wenjie, Yang, Jing, Wang, Shengqi
Publicado em 2006

RDMAS: a web server for RNA deleterious mutation analysis

Por Shu, Wenjie, Bo, Xiaochen, Liu, Rujia, Zhao, Dongsheng, Zheng, Zhiqiang, Wang, Shengqi
Publicado em 2006

De novo identification of replication-timing domains in the human genome by deep learning

Por Liu, Feng, Ren, Chao, Li, Hao, Zhou, Pingkun, Bo, Xiaochen, Shu, Wenjie
Publicado no Bioinformatics (2016)

An integrative analysis of TFBS-clustered regions reveals new transcriptional regulation models on the accessible chromatin landscape

Por Chen, Hebing, Li, Hao, Liu, Feng, Zheng, Xiaofei, Wang, Shengqi, Bo, Xiaochen, Shu, Wenjie
Publicado no Sci Rep (2015)

Functional annotation of HOT regions in the human genome: implications for human disease and cancer

Por Li, Hao, Chen, Hebing, Liu, Feng, Ren, Chao, Wang, Shengqi, Bo, Xiaochen, Shu, Wenjie
Publicado no Sci Rep (2015)

iFORM: Incorporating Find Occurrence of Regulatory Motifs

Por Ren, Chao, Chen, Hebing, Yang, Bite, Liu, Feng, Ouyang, Zhangyi, Bo, Xiaochen, Shu, Wenjie
Publicado no PLoS One (2016)

Accurate identification of RNA editing sites from primitive sequence with deep neural networks

Por Ouyang, Zhangyi, Liu, Feng, Zhao, Chenghui, Ren, Chao, An, Gaole, Mei, Chuan, Bo, Xiaochen, Shu, Wenjie
Publicado no Sci Rep (2018)