DNA-RNA Hybrid (R-Loop): From a Unified Picture of the Mammalian Telomere to the Genome-Wide Profile

por Rassoulzadegan, Minoo, Sharifi-Zarchi, Ali, Kianmehr, Leila
Publicado en Cells (2021)

Comparative In Vitro Evaluation of Human Dental Pulp and Follicle Stem Cell Commitment

por Karamzadeh, Razieh, Baghaban Eslaminejad, Mohamadreza, Sharifi-Zarchi, Ali
Publicado en Cell J (2017)

DeePathology: Deep Multi-Task Learning for Inferring Molecular Pathology from Cancer Transcriptome

por Azarkhalili, Behrooz, Saberi, Ali, Chitsaz, Hamidreza, Sharifi-Zarchi, Ali
Publicado en Sci Rep (2019)

The metabolic network model of primed/naive human embryonic stem cells underlines the importance of oxidation-reduction potential and tryptophan metabolism in primed pluripotency

por Yousefi, Meisam, Marashi, Sayed-Amir, Sharifi-Zarchi, Ali, Taleahmad, Sara
Publicado en Cell Biosci (2019)

The assessment of efficient representation of drug features using deep learning for drug repositioning

por Moridi, Mahroo, Ghadirinia, Marzieh, Sharifi-Zarchi, Ali, Zare-Mirakabad, Fatemeh
Publicado en BMC Bioinformatics (2019)

ARYANA: Aligning Reads by Yet Another Approach

por Gholami, Milad, Arbabi, Aryan, Sharifi-Zarchi, Ali, Chitsaz, Hamidreza, Sadeghi, Mehdi
Publicado 2014

StrongestPath: a Cytoscape application for protein–protein interaction analysis

por Mousavian, Zaynab, Khodabandeh, Mehran, Sharifi-Zarchi, Ali, Nadafian, Alireza, Mahmoudi, Alireza
Publicado en BMC Bioinformatics (2021)

Genome-wide DNA methylation profiling in ectopic and eutopic of endometrial tissues

por Barjaste, Nadia, Shahhoseini, Maryam, Afsharian, Parvaneh, Sharifi-Zarchi, Ali, Masoudi-Nejad, Ali
Publicado en J Assist Reprod Genet (2019)

An integrative Bayesian network approach to highlight key drivers in systemic lupus erythematosus

por Maleknia, Samaneh, Salehi, Zahra, Rezaei Tabar, Vahid, Sharifi-Zarchi, Ali, Kavousi, Kaveh
Publicado en Arthritis Res Ther (2020)

Down-Regulation of miR-200c and Up-Regulation of miR-30c Target both Stemness and Metastasis Genes in Breast Cancer

por Rahimi, Mahsa, Sharifi-Zarchi, Ali, Zarghami, Nosratollah, Geranpayeh, Lobat, Ebrahimi, Marzieh, Alizadeh, Effat
Publicado en Cell J (2020)

Genome-Wide Distribution of Nascent Transcripts in Sperm DNA, Products of a Late Wave of General Transcription

por Kianmehr, Leila, Khazali, Homayoun, Rajabi-Maham, Hassan, Sharifi-Zarchi, Ali, Cuzin, François, Rassoulzadegan, Minoo
Publicado en Cells (2019)

miR-361-5p as a promising qRT-PCR internal control for tumor and normal breast tissues

por Ghanbari, Sogol, Salimi, Adel, Rahmani, Saeid, Nafissi, Nahid, Sharifi-Zarchi, Ali, Mowla, Seyed Javad
Publicado en PLoS One (2021)

Natural Biased Coin Encoded in the Genome Determines Cell Strategy

por Dorri, Faezeh, Mahini, Hamid, Sharifi-Zarchi, Ali, Totonchi, Mehdi, Tusserkani, Ruzbeh, Pezeshk, Hamid, Sadeghi, Mehdi
Publicado 2014

An integrated analysis to predict micro‐RNAs targeting both stemness and metastasis in breast cancer stem cells

por Rahimi, Mahsa, Sharifi‐Zarchi, Ali, Firouzi, Javad, Azimi, Mahnaz, Zarghami, Nosratollah, Alizadeh, Effat, Ebrahimi, Marzieh
Publicado en J Cell Mol Med (2019)

Graph Traversal Edit Distance and Extensions

por Ebrahimpour Boroojeny, Ali, Shrestha, Akash, Sharifi-Zarchi, Ali, Gallagher, Suzanne Renick, Sahinalp, S. Cenk, Chitsaz, Hamidreza
Publicado en J Comput Biol (2020)

Downregulation of Extracellular Matrix and Cell Adhesion Molecules in Cumulus Cells of Infertile Polycystic Ovary Syndrome Women With and Without Insulin Resistance

por Hassani, Fatemeh, Oryan, Shahrbanoo, Eftekhari-Yazdi, Poopak, Bazrgar, Masood, Moini, Ashraf, Nasiri, Nahid, Sharifi-Zarchi, Ali
Publicado en Cell J (2019)

Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks

por Abdolhosseini, Farzad, Azarkhalili, Behrooz, Maazallahi, Abbas, Kamal, Aryan, Motahari, Seyed Abolfazl, Sharifi-Zarchi, Ali, Chitsaz, Hamidreza
Publicado en Sci Rep (2019)

PyGTED: Python Application for Computing Graph Traversal Edit Distance

por Ebrahimpour Boroojeny, Ali, Shrestha, Akash, Sharifi-zarchi, Ali, Gallagher, Suzanne Renick, Sahinalp, Süleyman Cenk, Chitsaz, Hamidreza
Publicado en J Comput Biol (2020)

Analysis of gene expression profiles and protein-protein interaction networks in multiple tissues of systemic sclerosis

por Karimizadeh, Elham, Sharifi-Zarchi, Ali, Nikaein, Hassan, Salehi, Seyedehsaba, Salamatian, Bahar, Elmi, Naser, Gharibdoost, Farhad, Mahmoudi, Mahdi
Publicado en BMC Med Genomics (2019)

Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase

por Karamzadeh, Razieh, Karimi-Jafari, Mohammad Hossein, Sharifi-Zarchi, Ali, Chitsaz, Hamidreza, Salekdeh, Ghasem Hosseini, Moosavi-Movahedi, Ali Akbar
Publicado en Sci Rep (2017)