DNA-RNA Hybrid (R-Loop): From a Unified Picture of the Mammalian Telomere to the Genome-Wide Profile

av Rassoulzadegan, Minoo, Sharifi-Zarchi, Ali, Kianmehr, Leila
I publikationen Cells (2021)

Comparative In Vitro Evaluation of Human Dental Pulp and Follicle Stem Cell Commitment

av Karamzadeh, Razieh, Baghaban Eslaminejad, Mohamadreza, Sharifi-Zarchi, Ali
I publikationen Cell J (2017)

DeePathology: Deep Multi-Task Learning for Inferring Molecular Pathology from Cancer Transcriptome

av Azarkhalili, Behrooz, Saberi, Ali, Chitsaz, Hamidreza, Sharifi-Zarchi, Ali
I publikationen Sci Rep (2019)

The metabolic network model of primed/naive human embryonic stem cells underlines the importance of oxidation-reduction potential and tryptophan metabolism in primed pluripotency

av Yousefi, Meisam, Marashi, Sayed-Amir, Sharifi-Zarchi, Ali, Taleahmad, Sara
I publikationen Cell Biosci (2019)

The assessment of efficient representation of drug features using deep learning for drug repositioning

av Moridi, Mahroo, Ghadirinia, Marzieh, Sharifi-Zarchi, Ali, Zare-Mirakabad, Fatemeh
I publikationen BMC Bioinformatics (2019)

ARYANA: Aligning Reads by Yet Another Approach

av Gholami, Milad, Arbabi, Aryan, Sharifi-Zarchi, Ali, Chitsaz, Hamidreza, Sadeghi, Mehdi
Publicerad 2014

StrongestPath: a Cytoscape application for protein–protein interaction analysis

av Mousavian, Zaynab, Khodabandeh, Mehran, Sharifi-Zarchi, Ali, Nadafian, Alireza, Mahmoudi, Alireza
I publikationen BMC Bioinformatics (2021)

Genome-wide DNA methylation profiling in ectopic and eutopic of endometrial tissues

av Barjaste, Nadia, Shahhoseini, Maryam, Afsharian, Parvaneh, Sharifi-Zarchi, Ali, Masoudi-Nejad, Ali
I publikationen J Assist Reprod Genet (2019)

An integrative Bayesian network approach to highlight key drivers in systemic lupus erythematosus

av Maleknia, Samaneh, Salehi, Zahra, Rezaei Tabar, Vahid, Sharifi-Zarchi, Ali, Kavousi, Kaveh
I publikationen Arthritis Res Ther (2020)

Down-Regulation of miR-200c and Up-Regulation of miR-30c Target both Stemness and Metastasis Genes in Breast Cancer

av Rahimi, Mahsa, Sharifi-Zarchi, Ali, Zarghami, Nosratollah, Geranpayeh, Lobat, Ebrahimi, Marzieh, Alizadeh, Effat
I publikationen Cell J (2020)

Genome-Wide Distribution of Nascent Transcripts in Sperm DNA, Products of a Late Wave of General Transcription

av Kianmehr, Leila, Khazali, Homayoun, Rajabi-Maham, Hassan, Sharifi-Zarchi, Ali, Cuzin, François, Rassoulzadegan, Minoo
I publikationen Cells (2019)

miR-361-5p as a promising qRT-PCR internal control for tumor and normal breast tissues

av Ghanbari, Sogol, Salimi, Adel, Rahmani, Saeid, Nafissi, Nahid, Sharifi-Zarchi, Ali, Mowla, Seyed Javad
I publikationen PLoS One (2021)

Natural Biased Coin Encoded in the Genome Determines Cell Strategy

av Dorri, Faezeh, Mahini, Hamid, Sharifi-Zarchi, Ali, Totonchi, Mehdi, Tusserkani, Ruzbeh, Pezeshk, Hamid, Sadeghi, Mehdi
Publicerad 2014

An integrated analysis to predict micro‐RNAs targeting both stemness and metastasis in breast cancer stem cells

av Rahimi, Mahsa, Sharifi‐Zarchi, Ali, Firouzi, Javad, Azimi, Mahnaz, Zarghami, Nosratollah, Alizadeh, Effat, Ebrahimi, Marzieh
I publikationen J Cell Mol Med (2019)

Graph Traversal Edit Distance and Extensions

av Ebrahimpour Boroojeny, Ali, Shrestha, Akash, Sharifi-Zarchi, Ali, Gallagher, Suzanne Renick, Sahinalp, S. Cenk, Chitsaz, Hamidreza
I publikationen J Comput Biol (2020)

Downregulation of Extracellular Matrix and Cell Adhesion Molecules in Cumulus Cells of Infertile Polycystic Ovary Syndrome Women With and Without Insulin Resistance

av Hassani, Fatemeh, Oryan, Shahrbanoo, Eftekhari-Yazdi, Poopak, Bazrgar, Masood, Moini, Ashraf, Nasiri, Nahid, Sharifi-Zarchi, Ali
I publikationen Cell J (2019)

Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks

av Abdolhosseini, Farzad, Azarkhalili, Behrooz, Maazallahi, Abbas, Kamal, Aryan, Motahari, Seyed Abolfazl, Sharifi-Zarchi, Ali, Chitsaz, Hamidreza
I publikationen Sci Rep (2019)

PyGTED: Python Application for Computing Graph Traversal Edit Distance

av Ebrahimpour Boroojeny, Ali, Shrestha, Akash, Sharifi-zarchi, Ali, Gallagher, Suzanne Renick, Sahinalp, Süleyman Cenk, Chitsaz, Hamidreza
I publikationen J Comput Biol (2020)

Analysis of gene expression profiles and protein-protein interaction networks in multiple tissues of systemic sclerosis

av Karimizadeh, Elham, Sharifi-Zarchi, Ali, Nikaein, Hassan, Salehi, Seyedehsaba, Salamatian, Bahar, Elmi, Naser, Gharibdoost, Farhad, Mahmoudi, Mahdi
I publikationen BMC Med Genomics (2019)

Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase

av Karamzadeh, Razieh, Karimi-Jafari, Mohammad Hossein, Sharifi-Zarchi, Ali, Chitsaz, Hamidreza, Salekdeh, Ghasem Hosseini, Moosavi-Movahedi, Ali Akbar
I publikationen Sci Rep (2017)