Genome-Scale Model for Clostridium acetobutylicum: Part II. Development of Specific Proton Flux States and Numerically Determined Sub-Systems

Por Senger, Ryan S., Papoutsakis, Eleftherios T.
Publicado em 2008

Genome-Scale Model for Clostridium acetobutylicum: Part I. Metabolic Network Resolution and Analysis

Por Senger, Ryan S., Papoutsakis, Eleftherios T.
Publicado em 2008

Peptide-Guided Surface-Enhanced Raman Scattering Probes for Localized Cell Composition Analysis

Por Athamneh, Ahmad I. M., Senger, Ryan S.
Publicado em 2012

Designing novel cellulase systems through agent-based modeling and global sensitivity analysis

Por Apte, Advait A, Senger, Ryan S, Fong, Stephen S
Publicado em 2014

Computational Approaches in Metabolic Engineering

Por Reed, Jennifer L., Senger, Ryan S., Antoniewicz, Maciek R., Young, Jamey D.
Publicado em 2010

A review of metabolic and enzymatic engineering strategies for designing and optimizing performance of microbial cell factories

Por Fisher, Amanda K., Freedman, Benjamin G., Bevan, David R., Senger, Ryan S.
Publicado em 2014

Genome-scale modeling using flux ratio constraints to enable metabolic engineering of clostridial metabolism in silico

Por McAnulty, Michael J, Yen, Jiun Y, Freedman, Benjamin G, Senger, Ryan S
Publicado em 2012

A General Framework for Designing and Validating Oligomer-Based DNA Microarrays and Its Application to Clostridium acetobutylicum

Por Paredes, Carlos J., Senger, Ryan S., Spath, Iwona S., Borden, Jacob R., Sillers, Ryan, Papoutsakis, Eleftherios T.
Publicado em 2007

Near-Real-Time Analysis of the Phenotypic Responses of Escherichia coli to 1-Butanol Exposure Using Raman Spectroscopy

Por Zu, Theresah N. K., Athamneh, Ahmad I. M., Wallace, Robert S., Collakova, Eva, Senger, Ryan S.
Publicado no J Bacteriol (2014)

The transcriptional program underlying the physiology of clostridial sporulation

Por Jones, Shawn W, Paredes, Carlos J, Tracy, Bryan, Cheng, Nathan, Sillers, Ryan, Senger, Ryan S, Papoutsakis, Eleftherios T
Publicado em 2008

Transport of Magnesium by a Bacterial Nramp-Related Gene

Por Shin, Jung-Ho, Wakeman, Catherine A., Goodson, Jonathan R., Rodionov, Dmitry A., Freedman, Benjamin G., Senger, Ryan S., Winkler, Wade C.
Publicado em 2014

Modification of the Mycotoxin Deoxynivalenol Using Microorganisms Isolated from Environmental Samples

Por Wilson, Nina M., McMaster, Nicole, Gantulga, Dash, Soyars, Cara, McCormick, Susan P., Knott, Ken, Senger, Ryan S., Schmale, David G.
Publicado no Toxins (Basel) (2017)

Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052

Por Milne, Caroline B, Eddy, James A, Raju, Ravali, Ardekani, Soroush, Kim, Pan-Jun, Senger, Ryan S, Jin, Yong-Su, Blaschek, Hans P, Price, Nathan D
Publicado em 2011

High-yield hydrogen production from biomass by in vitro metabolic engineering: Mixed sugars coutilization and kinetic modeling

Por Rollin, Joseph A., Martin del Campo, Julia, Myung, Suwan, Sun, Fangfang, You, Chun, Bakovic, Allison, Castro, Roberto, Chandrayan, Sanjeev K., Wu, Chang-Hao, Adams, Michael W. W., Senger, Ryan S., Zhang, Y.-H. Percival
Publicado no Proc Natl Acad Sci U S A (2015)

Do genome-scale models need exact solvers or clearer standards?

Por Ebrahim, Ali, Almaas, Eivind, Bauer, Eugen, Bordbar, Aarash, Burgard, Anthony P, Chang, Roger L, Dräger, Andreas, Famili, Iman, Feist, Adam M, Fleming, Ronan MT, Fong, Stephen S, Hatzimanikatis, Vassily, Herrgård, Markus J, Holder, Allen, Hucka, Michael, Hyduke, Daniel, Jamshidi, Neema, Lee, Sang Yup, Le Novère, Nicolas, Lerman, Joshua A, Lewis, Nathan E, Ma, Ding, Mahadevan, Radhakrishnan, Maranas, Costas, Nagarajan, Harish, Navid, Ali, Nielsen, Jens, Nielsen, Lars K, Nogales, Juan, Noronha, Alberto, Pal, Csaba, Palsson, Bernhard O, Papin, Jason A, Patil, Kiran R, Price, Nathan D, Reed, Jennifer L, Saunders, Michael, Senger, Ryan S, Sonnenschein, Nikolaus, Sun, Yuekai, Thiele, Ines
Publicado no Mol Syst Biol (2015)