Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs

par Scholz, Matthew, Lo, Chien-Chi, Chain, Patrick S. G.
Publié 2014

Recruiting Human Microbiome Shotgun Data to Site-Specific Reference Genomes

par Xie, Gary, Lo, Chien-Chi, Scholz, Matthew, Chain, Patrick S. G.
Publié 2014

Draft Genome Sequence of Bacillus altitudinis YNP4-TSU, Isolated from Yellowstone National Park

par OHair, Joshua A., Li, Hui, Thapa, Santosh, Scholz, Matthew, Zhou, Suping
Publié dans Genome Announc (2017)

High-Salt Conditions Alter Transcription of Helicobacter pylori Genes Encoding Outer Membrane Proteins

par Loh, John T., Beckett, Amber C., Scholz, Matthew B., Cover, Timothy L.
Publié dans Infect Immun (2018)

SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis

par Johnson, Benjamin K., Scholz, Matthew B., Teal, Tracy K., Abramovitch, Robert B.
Publié dans BMC Bioinformatics (2016)

Draft Genome Sequences of Three Cellulolytic Bacillus licheniformis Strains Isolated from Imperial Geyser, Amphitheater Springs, and Whiterock Springs inside Yellowstone National P...

par O' Hair, Joshua A., Li, Hui, Thapa, Santosh, Scholz, Matthew, Zhou, Suping
Publié dans Genome Announc (2017)

Accurate read-based metagenome characterization using a hierarchical suite of unique signatures

par Freitas, Tracey Allen K., Li, Po-E, Scholz, Matthew B., Chain, Patrick S. G.
Publié dans Nucleic Acids Res (2015)

Draft Genome Sequence of Bacillus licheniformis Strain YNP1-TSU Isolated from Whiterock Springs in Yellowstone National Park

par O'Hair, Joshua A., Li, Hui, Thapa, Santosh, Scholz, Matthew B., Zhou, Suping
Publié dans Genome Announc (2017)

In Vitro and In Vivo Evaluations of the Activities of Lauric Acid Monoester Formulations against Staphylococcus aureus

par Rouse, Mark S., Rotger, Margalida, Piper, Kerryl E., Steckelberg, James M., Scholz, Matthew, Andrews, Jeffrey, Patel, Robin
Publié 2005

Multi-Omic Analysis of the Microbiome and Metabolome in Healthy Subjects Reveals Microbiome-Dependent Relationships Between Diet and Metabolites

par Tang, Zheng-Zheng, Chen, Guanhua, Hong, Qilin, Huang, Shi, Smith, Holly M., Shah, Rachana D., Scholz, Matthew, Ferguson, Jane F.
Publié dans Front Genet (2019)

Ultrastructure and Composition of the Nannochloropsis gaditana Cell Wall

par Scholz, Matthew J., Weiss, Taylor L., Jinkerson, Robert E., Jing, Jia, Roth, Robyn, Goodenough, Ursula, Posewitz, Matthew C., Gerken, Henri G.
Publié dans Eukaryot Cell (2014)


Regulatory Considerations for Gene Therapy Products in the US, EU, and Japan


par Halioua-Haubold, Celine-Lea, Peyer, James G., Smith, James A., Arshad, Zeeshaan, Scholz, Matthew, Brindley, David A., MacLaren, Robert E.
Publié dans Yale J Biol Med (2017)

Effect of environmental salt concentration on the Helicobacter pylori exoproteome

par Caston, Rhonda R., Loh, John T., Voss, Bradley J., McDonald, W. Hayes, Scholz, Matthew B., McClain, Mark S., Cover, Timothy L.
Publié dans J Proteomics (2019)

Facile, High Quality Sequencing of Bacterial Genomes from Small Amounts of DNA

par Vuyisich, Momchilo, Arefin, Ayesha, Davenport, Karen, Feng, Shihai, Gleasner, Cheryl, McMurry, Kim, Parson-Quintana, Beverly, Price, Jennifer, Scholz, Matthew, Chain, Patrick
Publié dans Int J Genomics (2014)

Re-evaluation of a novel resistance mutation in eccC(5) of the ESX-5 secretion system in ofloxacin-resistant Mycobacterium tuberculosis

par Blackman, Amondrea, Morrison, Bob, Maruri, Fernanda, van der Heijden, Yuri, Nochowicz, Cindy Hager, Guo, Yan, Scholz, Matthew, Rustad, Tige, Sherman, David R, Sterling, Timothy R
Publié dans J Antimicrob Chemother (2020)

Modification of the Gastric Mucosal Microbiota by a Strain-Specific Helicobacter pylori Oncoprotein and Carcinogenic Histologic Phenotype

par Noto, Jennifer M., Zackular, Joseph P., Varga, Matthew G., Delgado, Alberto, Romero-Gallo, Judith, Scholz, Matthew B., Piazuelo, M. Blanca, Skaar, Eric P., Peek, Richard M.
Publié dans mBio (2019)

Delineation of the pH-Responsive Regulon Controlled by the Helicobacter pylori ArsRS Two-Component System

par Loh, John T., Shum, Miranda V., Jossart, Scott D. R., Campbell, Anne M., Sawhney, Neha, McDonald, W. Hayes, Scholz, Matthew B., McClain, Mark S., Forsyth, Mark H., Cover, Timothy L.
Publié dans Infect Immun (2021)

Endogenous double-stranded Alu RNA elements stimulate IFN-responses in relapsing remitting multiple sclerosis

par Heinrich, Maxwell J., Purcell, Caroline A, Pruijssers, Andrea J., Zhao, Yang, Spurlock, Charles F., Sriram, Subramaniam, Ogden, Kristen M, Dermody, Terence S., Scholz, Matthew B., Crooke, Philip S., Karijolich, John, Aune, Thomas M.
Publié dans J Autoimmun (2019)

Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage

par Dodsworth, Jeremy A., Blainey, Paul C., Murugapiran, Senthil K., Swingley, Wesley D., Ross, Christian A., Tringe, Susannah G., Chain, Patrick S. G., Scholz, Matthew B., Lo, Chien-Chi, Raymond, Jason, Quake, Stephen R., Hedlund, Brian P.
Publié 2013

Draft Genome Assembly of Acinetobacter baumannii ATCC 19606

par Davenport, Karen W., Daligault, Hajnalka E., Minogue, Timothy D., Bruce, David C., Chain, Patrick S. G., Coyne, Susan R., Jaissle, James G., Koroleva, Galina I., Ladner, Jason T., Li, Po-E, Palacios, Gustavo F., Scholz, Matthew B., Teshima, Hazuki, Johnson, Shannon L.
Publié 2014