Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

Tekijä Schmieder, Robert, Edwards, Robert
Julkaistu 2011

Quality control and preprocessing of metagenomic datasets

Tekijä Schmieder, Robert, Edwards, Robert
Julkaistu 2011

Identification and removal of ribosomal RNA sequences from metatranscriptomes

Tekijä Schmieder, Robert, Lim, Yan Wei, Edwards, Robert
Julkaistu 2012

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets

Tekijä Schmieder, Robert, Lim, Yan Wei, Rohwer, Forest, Edwards, Robert
Julkaistu 2010

PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity

Tekijä Dwivedi, Bhakti, Schmieder, Robert, Goldsmith, Dawn B, Edwards, Robert A, Breitbart, Mya
Julkaistu 2012

Microfluidic PCR Combined with Pyrosequencing for Identification of Allelic Variants with Phenotypic Associations among Targeted Salmonella Genes

Tekijä Yue, Min, Schmieder, Robert, Edwards, Robert A., Rankin, Shelley C., Schifferli, Dieter M.
Julkaistu 2012

SEQanswers: an open access community for collaboratively decoding genomes

Tekijä Li, Jing-Woei, Schmieder, Robert, Ward, R. Matthew, Delenick, Joann, Olivares, Eric C., Mittelman, David
Julkaistu 2012

Reference-independent comparative metagenomics using cross-assembly: crAss

Tekijä Dutilh, Bas E., Schmieder, Robert, Nulton, Jim, Felts, Ben, Salamon, Peter, Edwards, Robert A., Mokili, John L.
Julkaistu 2012

Combining de novo and reference-guided assembly with scaffold_builder

Tekijä Silva, Genivaldo GZ, Dutilh, Bas E, Matthews, T David, Elkins, Keri, Schmieder, Robert, Dinsdale, Elizabeth A, Edwards, Robert A
Julkaistu 2013

Spatial distribution of microbial communities in the cystic fibrosis lung

Tekijä Willner, Dana, Haynes, Matthew R, Furlan, Mike, Schmieder, Robert, Lim, Yan Wei, Rainey, Paul B, Rohwer, Forest, Conrad, Douglas
Julkaistu 2012

Characterization of Amoeboaphelidium protococcarum, an Algal Parasite New to the Cryptomycota Isolated from an Outdoor Algal Pond Used for the Production of Biofuel

Tekijä Letcher, Peter M., Lopez, Salvador, Schmieder, Robert, Lee, Philip A., Behnke, Craig, Powell, Martha J., McBride, Robert C.
Julkaistu 2013

Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals

Tekijä Willner, Dana, Furlan, Mike, Haynes, Matthew, Schmieder, Robert, Angly, Florent E., Silva, Joas, Tammadoni, Sassan, Nosrat, Bahador, Conrad, Douglas, Rohwer, Forest
Julkaistu 2009

Clinical Insights from Metagenomic Analysis of Sputum Samples from Patients with Cystic Fibrosis

Tekijä Lim, Yan Wei, Evangelista, Jose S., Schmieder, Robert, Bailey, Barbara, Haynes, Matthew, Furlan, Mike, Maughan, Heather, Edwards, Robert, Rohwer, Forest, Conrad, Douglas
Julkaistu 2014

Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation

Tekijä Whiteson, Katrine L, Meinardi, Simone, Lim, Yan Wei, Schmieder, Robert, Maughan, Heather, Quinn, Robert, Blake, Donald R, Conrad, Douglas, Rohwer, Forest
Julkaistu 2014

METAGENOMICS AND METATRANSCRIPTOMICS: WINDOWS ON CF-ASSOCIATED VIRAL AND MICROBIAL COMMUNITIES

Tekijä Lim, Yan Wei, Schmieder, Robert, Haynes, Matthew, Willner, Dana, Furlan, Mike, Youle, Merry, Abbott, Katelynn, Edwards, Robert, Evangelista, Jose, Conrad, Douglas, Rohwer, Forest
Julkaistu 2012

Broad Surveys of DNA Viral Diversity Obtained through Viral Metagenomics of Mosquitoes

Tekijä Ng, Terry Fei Fan, Willner, Dana L., Lim, Yan Wei, Schmieder, Robert, Chau, Betty, Nilsson, Christina, Anthony, Simon, Ruan, Yijun, Rohwer, Forest, Breitbart, Mya
Julkaistu 2011

Case Studies of the Spatial Heterogeneity of DNA Viruses in the Cystic Fibrosis Lung

Tekijä Willner, Dana, Haynes, Matthew R., Furlan, Mike, Hanson, Nicole, Kirby, Breeann, Lim, Yan Wei, Rainey, Paul B., Schmieder, Robert, Youle, Merry, Conrad, Douglas, Rohwer, Forest
Julkaistu 2012

Distinct Lineage of Vesiculovirus from Big Brown Bats, United States

Tekijä Ng, Terry Fei Fan, Driscoll, Cindy, Carlos, Maria Paz, Prioleau, Algernon, Schmieder, Robert, Dwivedi, Bhakti, Wong, Jakk, Cha, Yunhee, Head, Steven, Breitbart, Mya, Delwart, Eric
Julkaistu 2013

Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity

Tekijä Willner, Dana, Furlan, Mike, Schmieder, Robert, Grasis, Juris A., Pride, David T., Relman, David A., Angly, Florent E., McDole, Tracey, Mariella, Ray P., Rohwer, Forest, Haynes, Matthew
Julkaistu 2011

Mechanistic Model of Rothia mucilaginosa Adaptation toward Persistence in the CF Lung, Based on a Genome Reconstructed from Metagenomic Data

Tekijä Lim, Yan Wei, Schmieder, Robert, Haynes, Matthew, Furlan, Mike, Matthews, T. David, Whiteson, Katrine, Poole, Stephen J., Hayes, Christopher S., Low, David A., Maughan, Heather, Edwards, Robert, Conrad, Douglas, Rohwer, Forest
Julkaistu 2013