Probabilistic Inference of Biological Networks via Data Integration

Por Rogers, Mark F., Campbell, Colin, Ying, Yiming
Publicado no Biomed Res Int (2015)

CScape-somatic: distinguishing driver and passenger point mutations in the cancer genome

Por Rogers, Mark F, Gaunt, Tom R, Campbell, Colin
Publicado no Bioinformatics (2020)

SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data

Por Rogers, Mark F, Thomas, Julie, Reddy, Anireddy SN, Ben-Hur, Asa
Publicado em 2012

HIPred: an integrative approach to predicting haploinsufficient genes

Por Shihab, Hashem A, Rogers, Mark F, Campbell, Colin, Gaunt, Tom R
Publicado no Bioinformatics (2017)

CScape: a tool for predicting oncogenic single-point mutations in the cancer genome

Por Rogers, Mark F., Shihab, Hashem A., Gaunt, Tom R., Campbell, Colin
Publicado no Sci Rep (2017)

Rapid, robust plasmid verification by de novo assembly of short sequencing reads

Por Gallegos, Jenna E, Rogers, Mark F, Cialek, Charlotte A, Peccoud, Jean
Publicado no Nucleic Acids Res (2020)

GTB – an online genome tolerance browser

Por Shihab, Hashem A., Rogers, Mark F., Ferlaino, Michael, Campbell, Colin, Gaunt, Tom R.
Publicado no BMC Bioinformatics (2017)

Estimating the Frequency of Single Point Driver Mutations across Common Solid Tumours

Por Darbyshire, Madeleine, du Toit, Zachary, Rogers, Mark F., Gaunt, Tom R., Campbell, Colin
Publicado no Sci Rep (2019)

Deciphering the Plant Splicing Code: Experimental and Computational Approaches for Predicting Alternative Splicing and Splicing Regulatory Elements

Por Reddy, Anireddy S. N., Rogers, Mark F., Richardson, Dale N., Hamilton, Michael, Ben-Hur, Asa
Publicado em 2012

Genome-wide analysis of alternative splicing in Chlamydomonas reinhardtii

Por Labadorf, Adam, Link, Alicia, Rogers, Mark F, Thomas, Julie, Reddy, Anireddy SN, Ben-Hur, Asa
Publicado em 2010

Recognition memory-induced gene expression in the perirhinal cortex: A transcriptomic analysis

Por Scott, Hannah, Rogers, Mark F., Scott, Helen L., Campbell, Colin, Warburton, Elizabeth C., Uney, James B.
Publicado no Behav Brain Res (2017)

FATHMM-XF: accurate prediction of pathogenic point mutations via extended features

Por Rogers, Mark F, Shihab, Hashem A, Mort, Matthew, Cooper, David N, Gaunt, Tom R, Campbell, Colin
Publicado no Bioinformatics (2018)

An integrative approach to predicting the functional effects of small indels in non-coding regions of the human genome

Por Ferlaino, Michael, Rogers, Mark F., Shihab, Hashem A., Mort, Matthew, Cooper, David N., Gaunt, Tom R., Campbell, Colin
Publicado no BMC Bioinformatics (2017)

Comparative Analysis of Serine/Arginine-Rich Proteins across 27 Eukaryotes: Insights into Sub-Family Classification and Extent of Alternative Splicing

Por Richardson, Dale N., Rogers, Mark F., Labadorf, Adam, Ben-Hur, Asa, Guo, Hui, Paterson, Andrew H., Reddy, Anireddy S. N.
Publicado em 2011

Glucocorticoid Receptor–Tethered Mineralocorticoid Receptors Increase Glucocorticoid-Induced Transcriptional Responses

Por Rivers, Caroline A, Rogers, Mark F, Stubbs, Felicity E, Conway-Campbell, Becky L, Lightman, Stafford L, Pooley, John R
Publicado no Endocrinology (2019)

Preeclamptic placentae release factors that damage neurons: implications for foetal programming of disease

Por Scott, Hannah, Phillips, Tom J., Stuart, Greer C., Rogers, Mark F., Steinkraus, Bruno R., Grant, Simon, Case, C. Patrick
Publicado no Neuronal Signal (2018)

Nucleotide diversity of functionally different groups of immune response genes in Old World camels based on newly annotated and reference-guided assemblies

Por Lado, Sara, Elbers, Jean P., Rogers, Mark F., Melo-Ferreira, José, Yadamsuren, Adiya, Corander, Jukka, Horin, Petr, Burger, Pamela A.
Publicado no BMC Genomics (2020)

An integrative approach to predicting the functional effects of non-coding and coding sequence variation

Por Shihab, Hashem A., Rogers, Mark F., Gough, Julian, Mort, Matthew, Cooper, David N., Day, Ian N. M., Gaunt, Tom R., Campbell, Colin
Publicado no Bioinformatics (2015)

Genetic interactions derived from high-throughput phenotyping of 6589 yeast cell cycle mutants

Por Gallegos, Jenna E., Adames, Neil R., Rogers, Mark F., Kraikivski, Pavel, Ibele, Aubrey, Nurzynski-Loth, Kevin, Kudlow, Eric, Murali, T. M., Tyson, John J., Peccoud, Jean
Publicado no NPJ Syst Biol Appl (2020)

Improving Illumina assemblies with Hi‐C and long reads: An example with the North African dromedary

Por Elbers, Jean P., Rogers, Mark F., Perelman, Polina L., Proskuryakova, Anastasia A., Serdyukova, Natalia A., Johnson, Warren E., Horin, Petr, Corander, Jukka, Murphy, David, Burger, Pamela A.
Publicado no Mol Ecol Resour (2019)