Proteny: discovering and visualizing statistically significant syntenic clusters at the proteome level

Por Gehrmann, Thies, Reinders, Marcel J.T.
Publicado no Bioinformatics (2015)

2D Representation of Transcriptomes by t-SNE Exposes Relatedness between Human Tissues

Por Taskesen, Erdogan, Reinders, Marcel J. T.
Publicado no PLoS One (2016)

A scale-space method for detecting recurrent DNA copy number changes with analytical false discovery rate control

Por van Dyk, Ewald, Reinders, Marcel J.T., Wessels, Lodewyk F.A.
Publicado em 2013

Erratum to: Breast cancer subtype predictors revisited: from consensus to concordance?

Por Sontrop, Herman M. J., Reinders, Marcel J. T., Moerland, Perry D.
Publicado no BMC Med Genomics (2016)

Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold

Por Nijkamp, Jurgen F., Pop, Mihai, Reinders, Marcel J. T., de Ridder, Dick
Publicado em 2013

Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data

Por Gritsenko, Alexey A., Hulsman, Marc, Reinders, Marcel J. T., de Ridder, Dick
Publicado no PLoS Comput Biol (2015)

Fewer permutations, more accurate P-values

Por Knijnenburg, Theo A., Wessels, Lodewyk F. A., Reinders, Marcel J. T., Shmulevich, Ilya
Publicado em 2009

Switching from a Unicellular to Multicellular Organization in an Aspergillus niger Hypha

Por Bleichrodt, Robert-Jan, Hulsman, Marc, Wösten, Han A. B., Reinders, Marcel J. T.
Publicado no mBio (2015)

Integration of Known Transcription Factor Binding Site Information and Gene Expression Data to Advance from Co-Expression to Co-Regulation

Por Clements, Maarten, van Someren, Eugene P., Knijnenburg, Theo A., Reinders, Marcel J.T.
Publicado no Genomics Proteomics Bioinformatics (2007)

Calculating the fetal fraction for noninvasive prenatal testing based on genome‐wide nucleosome profiles

Por Straver, Roy, Oudejans, Cees B. M., Sistermans, Erik A., Reinders, Marcel J. T.
Publicado no Prenat Diagn (2016)

Brain transcriptome atlases: a computational perspective

Por Mahfouz, Ahmed, Huisman, Sjoerd M. H., Lelieveldt, Boudewijn P. F., Reinders, Marcel J. T.
Publicado no Brain Struct Funct (2016)

Module-Based Outcome Prediction Using Breast Cancer Compendia

Por van Vliet, Martin H., Klijn, Christiaan N., Wessels, Lodewyk F. A., Reinders, Marcel J. T.
Publicado em 2007

An Evaluation Protocol for Subtype-Specific Breast Cancer Event Prediction

Por Sontrop, Herman M. J., Verhaegh, Wim F. J., Reinders, Marcel J. T., Moerland, Perry D.
Publicado em 2011

Understanding Regulation of Metabolism through Feasibility Analysis

Por Nikerel, Emrah, Berkhout, Jan, Hu, Fengyuan, Teusink, Bas, Reinders, Marcel J. T., de Ridder, Dick
Publicado em 2012

Shared Pathways Among Autism Candidate Genes Determined by Co-expression Network Analysis of the Developing Human Brain Transcriptome

Por Mahfouz, Ahmed, Ziats, Mark N., Rennert, Owen M., Lelieveldt, Boudewijn P.F., Reinders, Marcel J.T.
Publicado no J Mol Neurosci (2015)

RUBIC identifies driver genes by detecting recurrent DNA copy number breaks

Por van Dyk, Ewald, Hoogstraat, Marlous, ten Hoeve, Jelle, Reinders, Marcel J. T., Wessels, Lodewyk F. A.
Publicado no Nat Commun (2016)

WISECONDOR: detection of fetal aberrations from shallow sequencing maternal plasma based on a within-sample comparison scheme

Por Straver, Roy, Sistermans, Erik A., Holstege, Henne, Visser, Allerdien, Oudejans, Cees B. M., Reinders, Marcel J. T.
Publicado em 2014

Insight into Neutral and Disease-Associated Human Genetic Variants through Interpretable Predictors

Por van den Berg, Bastiaan A., Reinders, Marcel J. T., de Ridder, Dick, de Beer, Tjaart A. P.
Publicado no PLoS One (2015)

Schizophyllum commune has an extensive and functional alternative splicing repertoire

Por Gehrmann, Thies, Pelkmans, Jordi F., Lugones, Luis G., Wösten, Han A. B., Abeel, Thomas, Reinders, Marcel J. T.
Publicado no Sci Rep (2016)

Transcription factors of Schizophyllum commune involved in mushroom formation and modulation of vegetative growth

Por Pelkmans, Jordi F., Patil, Mohini B., Gehrmann, Thies, Reinders, Marcel J. T., Wösten, Han A. B., Lugones, Luis G.
Publicado no Sci Rep (2017)