Systematic genomic analysis reveals the complementary aerobic and anaerobic respiration capacities of the human gut microbiota

Por Ravcheev, Dmitry A., Thiele, Ines
Publicado no Front Microbiol (2014)

Genomic Analysis of the Human Gut Microbiome Suggests Novel Enzymes Involved in Quinone Biosynthesis

Por Ravcheev, Dmitry A., Thiele, Ines
Publicado no Front Microbiol (2016)

Paracoccus denitrificans possesses two BioR homologs having a role in regulation of biotin metabolism

Por Feng, Youjun, Kumar, Ritesh, Ravcheev, Dmitry A, Zhang, Huimin
Publicado no Microbiologyopen (2015)

Nitrogen Fixation and Molecular Oxygen: Comparative Genomic Reconstruction of Transcription Regulation in Alphaproteobacteria

Por Tsoy, Olga V., Ravcheev, Dmitry A., Čuklina, Jelena, Gelfand, Mikhail S.
Publicado no Front Microbiol (2016)

Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae)

Por Ravcheev, Dmitry A, Gerasimova, Anna V, Mironov, Andrey A, Gelfand, Mikhail S
Publicado em 2007

Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks

Por Ravcheev, Dmitry A, Godzik, Adam, Osterman, Andrei L, Rodionov, Dmitry A
Publicado em 2013

Comparative Genomic Analysis of the Hexuronate Metabolism Genes and Their Regulation in Gammaproteobacteria

Por Suvorova, Inna A., Tutukina, Maria N., Ravcheev, Dmitry A., Rodionov, Dmitry A., Ozoline, Olga N., Gelfand, Mikhail S.
Publicado em 2011

Temporal Regulation of Gene Expression of the Escherichia coli Bacteriophage phiEco32

Por Pavlova, Olga, Lavysh, Daria, Klimuk, Evgeny, Djordjevic, Marko, Ravcheev, Dmitry A, Gelfand, Mikhail S, Severinov, Konstantin, Akulenko, Natalja
Publicado em 2012

Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria

Por Ravcheev, Dmitry A, Best, Aaron A, Sernova, Natalia V, Kazanov, Marat D, Novichkov, Pavel S, Rodionov, Dmitry A
Publicado em 2013

Inference of the Transcriptional Regulatory Network in Staphylococcus aureus by Integration of Experimental and Genomics-Based Evidence

Por Ravcheev, Dmitry A., Best, Aaron A., Tintle, Nathan, DeJongh, Matthew, Osterman, Andrei L., Novichkov, Pavel S., Rodionov, Dmitry A.
Publicado em 2011

Redox-Responsive Repressor Rex Modulates Alcohol Production and Oxidative Stress Tolerance in Clostridium acetobutylicum

Por Zhang, Lei, Nie, Xiaoqun, Ravcheev, Dmitry A., Rodionov, Dmitry A., Sheng, Jia, Gu, Yang, Yang, Sheng, Jiang, Weihong, Yang, Chen
Publicado no J Bacteriol (2014)

Comparative genomics and evolution of transcriptional regulons in Proteobacteria

Por Leyn, Semen A., Suvorova, Inna A., Kazakov, Alexey E., Ravcheev, Dmitry A., Stepanova, Vita V., Novichkov, Pavel S., Rodionov, Dmitry A.
Publicado no Microb Genom (2016)

Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima

Por Rodionov, Dmitry A., Rodionova, Irina A., Li, Xiaoqing, Ravcheev, Dmitry A., Tarasova, Yekaterina, Portnoy, Vasiliy A., Zengler, Karsten, Osterman, Andrei L.
Publicado em 2013

Two novel regulators of N‐acetyl‐galactosamine utilization pathway and distinct roles in bacterial infections

Por Zhang, Huimin, Ravcheev, Dmitry A., Hu, Dan, Zhang, Fengyu, Gong, Xiufang, Hao, Lina, Cao, Min, Rodionov, Dmitry A., Wang, Changjun, Feng, Youjun
Publicado no Microbiologyopen (2015)

Transcriptional Regulation of Central Carbon and Energy Metabolism in Bacteria by Redox-Responsive Repressor Rex

Por Ravcheev, Dmitry A., Li, Xiaoqing, Latif, Haythem, Zengler, Karsten, Leyn, Semen A., Korostelev, Yuri D., Kazakov, Alexey E., Novichkov, Pavel S., Osterman, Andrei L., Rodionov, Dmitry A.
Publicado em 2012

Comparative genomics and evolution of regulons of the LacI-family transcription factors

Por Ravcheev, Dmitry A., Khoroshkin, Matvei S., Laikova, Olga N., Tsoy, Olga V., Sernova, Natalia V., Petrova, Svetlana A., Rakhmaninova, Aleksandra B., Novichkov, Pavel S., Gelfand, Mikhail S., Rodionov, Dmitry A.
Publicado em 2014

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

Por Novichkov, Pavel S, Kazakov, Alexey E, Ravcheev, Dmitry A, Leyn, Semen A, Kovaleva, Galina Y, Sutormin, Roman A, Kazanov, Marat D, Riehl, William, Arkin, Adam P, Dubchak, Inna, Rodionov, Dmitry A
Publicado em 2013

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the <it>Shewanella</it> genus

Por Kovaleva Galina, Kazakov Alexey E, Gerasimova Anna V, Ravcheev Dmitry A, Kazanov Marat D, Li Xiaoqing, Rodionova Irina A, Stavrovskaya Elena D, Novichkov Pavel S, Rodionov Dmitry A, Permina Elizabeth A, Laikova Olga N, Overbeek Ross, Romine Margaret F, Fredrickson James K, Arkin Adam P, Dubchak Inna, Osterman Andrei L, Gelfand Mikhail S
Publicado em 2011-06-01

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

Por Rodionov, Dmitry A, Novichkov, Pavel S, Stavrovskaya, Elena D, Rodionova, Irina A, Li, Xiaoqing, Kazanov, Marat D, Ravcheev, Dmitry A, Gerasimova, Anna V, Kazakov, Alexey E, Kovaleva, Galina Yu, Permina, Elizabeth A, Laikova, Olga N, Overbeek, Ross, Romine, Margaret F, Fredrickson, James K, Arkin, Adam P, Dubchak, Inna, Osterman, Andrei L, Gelfand, Mikhail S
Publicado em 2011