Multi-species sequence comparison: the next frontier in genome annotation

Por Dubchak, Inna, Frazer, Kelly
Publicado em 2003

AVID: A Global Alignment Program

Por Bray, Nick, Dubchak, Inna, Pachter, Lior
Publicado em 2003

A computational approach to identify genes for functional RNAs in genomic sequences

Por Carter, Richard J., Dubchak, Inna, Holbrook, Stephen R.
Publicado em 2001

Multiple whole-genome alignments without a reference organism

Por Dubchak, Inna, Poliakov, Alexander, Kislyuk, Andrey, Brudno, Michael
Publicado em 2009

GenomeVISTA—an integrated software package for whole-genome alignment and visualization

Por Poliakov, Alexandre, Foong, Justin, Brudno, Michael, Dubchak, Inna
Publicado em 2014

VISTA Enhancer Browser—a database of tissue-specific human enhancers

Por Visel, Axel, Minovitsky, Simon, Dubchak, Inna, Pennacchio, Len A.
Publicado em 2007

Short sequence motifs, overrepresented in mammalian conserved non-coding sequences

Por Kondrashov Alexey S, Kel Alexander, Stegmaier Philip, Minovitsky Simon, Dubchak Inna
Publicado em 2007-10-01

Multiple whole genome alignments and novel biomedical applications at the VISTA portal

Por Brudno, Michael, Poliakov, Alexander, Minovitsky, Simon, Ratnere, Igor, Dubchak, Inna
Publicado em 2007

Short sequence motifs, overrepresented in mammalian conserved non-coding sequences

Por Minovitsky, Simon, Stegmaier, Philip, Kel, Alexander, Kondrashov, Alexey S, Dubchak, Inna
Publicado em 2007

Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes

Por Novichkov, Pavel S., Wolf, Yuri I., Dubchak, Inna, Koonin, Eugene V.
Publicado em 2009

Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria

Por Rodionov, Dmitry A, Dubchak, Inna, Arkin, Adam, Alm, Eric, Gelfand, Mikhail S
Publicado em 2004

rVista for Comparative Sequence-Based Discovery of Functional Transcription Factor Binding Sites

Por Loots, Gabriela G., Ovcharenko, Ivan, Pachter, Lior, Dubchak, Inna, Rubin, Edward M.
Publicado em 2002

VISTA: computational tools for comparative genomics

Por Frazer, Kelly A., Pachter, Lior, Poliakov, Alexander, Rubin, Edward M., Dubchak, Inna
Publicado em 2004

The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons

Por Minovitsky, Simon, Gee, Sherry L., Schokrpur, Shiruyeh, Dubchak, Inna, Conboy, John G.
Publicado em 2005

ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes

Por Novichkov, Pavel S., Ratnere, Igor, Wolf, Yuri I., Koonin, Eugene V., Dubchak, Inna
Publicado em 2009

Comparative Genomics of the Dormancy Regulons in Mycobacteria

Por Gerasimova, Anna, Kazakov, Alexey E., Arkin, Adam P., Dubchak, Inna, Gelfand, Mikhail S.
Publicado em 2011

Elviz – exploration of metagenome assemblies with an interactive visualization tool

Por Cantor, Michael, Nordberg, Henrik, Smirnova, Tatyana, Hess, Matthias, Tringe, Susannah, Dubchak, Inna
Publicado no BMC Bioinformatics (2015)

Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing

Por Brudno, Michael, Gelfand, Mikhail S., Spengler, Sylvia, Zorn, Manfred, Dubchak, Inna, Conboy, John G.
Publicado em 2001

Cross-Species Sequence Comparisons: A Review of Methods and Available Resources

Por Frazer, Kelly A., Elnitski, Laura, Church, Deanna M., Dubchak, Inna, Hardison, Ross C.
Publicado em 2003

Tandem termination signal in plant mRNAs

Por Kochetov, Alex V., Volkova, Oxana A., Poliakov, Alexander, Dubchak, Inna, Rogozin, Igor B.
Publicado em 2011