ALEdb 1.0: a database of mutations from adaptive laboratory evolution experimentation

द्वारा Phaneuf, Patrick V, Gosting, Dennis, Palsson, Bernhard O, Feist, Adam M
में प्रकाशित Nucleic Acids Res (2019)

Synthetic Cross-Phyla Gene Replacement and Evolutionary Assimilation of Major Enzymes

द्वारा Sandberg, Troy E., Szubin, Richard, Phaneuf, Patrick V., Palsson, Bernhard O.
में प्रकाशित Nat Ecol Evol (2020)

iModulonDB: a knowledgebase of microbial transcriptional regulation derived from machine learning

द्वारा Rychel, Kevin, Decker, Katherine, Sastry, Anand V, Phaneuf, Patrick V, Poudel, Saugat, Palsson, Bernhard O
में प्रकाशित Nucleic Acids Res (2020)

Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity

द्वारा Phaneuf, Patrick V., Yurkovich, James T., Heckmann, David, Wu, Muyao, Sandberg, Troy E., King, Zachary A., Tan, Justin, Palsson, Bernhard O., Feist, Adam M.
में प्रकाशित BMC Genomics (2020)

Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers

द्वारा Heckmann, David, Campeau, Anaamika, Lloyd, Colton J., Phaneuf, Patrick V., Hefner, Ying, Carrillo-Terrazas, Marvic, Feist, Adam M., Gonzalez, David J., Palsson, Bernhard O.
में प्रकाशित Proc Natl Acad Sci U S A (2020)

Reframing gene essentiality in terms of adaptive flexibility

द्वारा Guzmán, Gabriela I., Olson, Connor A., Hefner, Ying, Phaneuf, Patrick V., Catoiu, Edward, Crepaldi, Lais B., Micas, Lucas Goldschmidt, Palsson, Bernhard O., Feist, Adam M.
में प्रकाशित BMC Syst Biol (2018)

The Bitome: digitized genomic features reveal fundamental genome organization

द्वारा Lamoureux, Cameron R, Choudhary, Kumari Sonal, King, Zachary A, Sandberg, Troy E, Gao, Ye, Sastry, Anand V, Phaneuf, Patrick V, Choe, Donghui, Cho, Byung-Kwan, Palsson, Bernhard O
में प्रकाशित Nucleic Acids Res (2020)

Adaptive evolution reveals a tradeoff between growth rate and oxidative stress during naphthoquinone-based aerobic respiration

द्वारा Anand, Amitesh, Chen, Ke, Yang, Laurence, Sastry, Anand V., Olson, Connor A., Poudel, Saugat, Seif, Yara, Hefner, Ying, Phaneuf, Patrick V., Xu, Sibei, Szubin, Richard, Feist, Adam M., Palsson, Bernhard O.
में प्रकाशित Proc Natl Acad Sci U S A (2019)

Adaptive laboratory evolution of Escherichia coli under acid stress

द्वारा Du, Bin, Olson, Connor A., Sastry, Anand V., Fang, Xin, Phaneuf, Patrick V., Chen, Ke, Wu, Muyao, Szubin, Richard, Xu, Sibei, Gao, Ye, Hefner, Ying, Feist, Adam M., Palsson, Bernhard O.
में प्रकाशित Microbiology (2020)

The genetic basis for adaptation of model-designed syntrophic co-cultures

द्वारा Lloyd, Colton J., King, Zachary A., Sandberg, Troy E., Hefner, Ying, Olson, Connor A., Phaneuf, Patrick V., O’Brien, Edward J., Sanders, Jon G., Salido, Rodolfo A., Sanders, Karenina, Brennan, Caitriona, Humphrey, Gregory, Knight, Rob, Feist, Adam M.
में प्रकाशित PLoS Comput Biol (2019)