Motif Tool Manager: a web-based platform for motif discovery

Por Phan, Vinhthuy
Publicado em 2009

Using partially ordered sets to represent and predict true patterns of gene response to treatments

Por Vo, Nam S, Phan, Vinhthuy
Publicado em 2013

Exploiting the bootstrap method to analyze patterns of gene expression

Por Vo, Nam S, Phan, Vinhthuy
Publicado em 2014

Alignment of short reads to multiple genomes using hashing

Por Tran, Quang, Phan, Vinhthuy
Publicado em 2014

Exploiting dependencies of pairwise comparison outcomes to predict patterns of gene response

Por Vo, Nam S, Phan, Vinhthuy
Publicado no BMC Bioinformatics (2014)

Improving variant calling by incorporating known genetic variants into read alignment

Por Vo, Nam S, Phan, Vinhthuy
Publicado no BMC Bioinformatics (2015)

An integrated approach for SNP calling based on population of genomes

Por Vo, Nam S, Tran, Quang, Phan, Vinhthuy
Publicado em 2014

Determining gene response patterns of time series gene expression data using R

Por O’kello, Kevin L, Phan, Vinhthuy
Publicado em 2014

Analysis of optimal alignments unfolds aligners’ bias in existing variant profiles

Por Tran, Quang, Gao, Shanshan, Phan, Vinhthuy
Publicado no BMC Bioinformatics (2016)

mDAG: a web-based tool for analyzing microarray data with multiple treatments

Por Phan, Vinhthuy T, Vo, Nam S, Sutter, Thomas R
Publicado em 2011

Alignment-free methods for metagenomic profiling

Por Gao, Shanshan, Pham, Diem-Trang, Phan, Vinhthuy
Publicado no BMC Bioinformatics (2015)

Using 16S rRNA gene as marker to detect unknown bacteria in microbial communities

Por Tran, Quang, Pham, Diem-Trang, Phan, Vinhthuy
Publicado no BMC Bioinformatics (2017)

RandAL: a randomized approach to aligning DNA sequences to reference genomes

Por Vo, Nam S, Tran, Quang, Niraula, Nobal, Phan, Vinhthuy
Publicado em 2014

A linear model for predicting performance of short-read aligners using genome complexity

Por Tran, Quang, Gao, Shanshan, Vo, Nam S, Phan, Vinhthuy
Publicado no BMC Bioinformatics (2015)

How genome complexity can explain the difficulty of aligning reads to genomes

Por Phan, Vinhthuy, Gao, Shanshan, Tran, Quang, Vo, Nam S
Publicado no BMC Bioinformatics (2015)

Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets

Por Phan Vinhthuy, Heinrich Kevin, Roy Sujoy, Berry Michael W, Homayouni Ramin
Publicado em 2011-10-01

Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets

Por Roy, Sujoy, Heinrich, Kevin, Phan, Vinhthuy, Berry, Michael W, Homayouni, Ramin
Publicado em 2011

ANALYZING MICROARRAY DATA WITH TRANSITIVE DIRECTED ACYCLIC GRAPHS

Por Phan, Vinhthuy, George, E. Olusegun, Tran, Quynh T., Goodwin, Shirlean, Bodreddigari, Sridevi, Sutter, Thomas R.
Publicado em 2009

Chemical genomics of cancer chemopreventive dithiolethiones

Por Tran, Quynh T., Xu, Lijing, Phan, Vinhthuy, Goodwin, Shirlean B., Rahman, Mostafizur, Jin, Victor X., Sutter, Carrie H., Roebuck, Bill D., Kensler, Thomas W., George, E.Olusegun, Sutter, Thomas R.
Publicado em 2009