In Silico Serotyping Based on Whole-Genome Sequencing Improves the Accuracy of Shigella Identification

le Wu, Yun, Lau, Henry K., Lee, Teresa, Lau, David K., Payne, Justin
Foilsithe in Appl Environ Microbiol (2019)

Complete Genome and Methylome Sequences of Two Salmonella enterica spp.

le Yao, Kuan, Muruvanda, Tim, Roberts, Richard J., Payne, Justin, Allard, Marc W., Hoffmann, Maria
Foilsithe in Genome Announc (2016)

Complete Genome and Methylome Sequences of Salmonella enterica subsp. enterica Serovar Panama (ATCC 7378) and Salmonella enterica subsp. enterica Serovar Sloterdijk (ATCC 15791)

le Yao, Kuan, Muruvanda, Tim, Roberts, Richard J., Payne, Justin, Allard, Marc W., Hoffmann, Maria
Foilsithe in Genome Announc (2016)

Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Agona 460004 2-1, Associated with a Multistate Outbreak in the United States

le Hoffmann, Maria, Payne, Justin, Roberts, Richard J., Allard, Marc W., Brown, Eric W., Pettengill, James B.
Foilsithe in Genome Announc (2015)

Draft Genome Sequences of Clinical Vibrio parahaemolyticus Strains Isolated in Maryland (2010–2013)

le Haendiges, Julie, Timme, Ruth, Allard, Marc, Myers, Robert A., Payne, Justin, Brown, Eric W., Evans, Peter, Gonzalez-Escalona, Narjol
Foilsithe 2014

Complete Genome Sequence of Enteroinvasive Escherichia coli O96:H19 Associated with a Severe Foodborne Outbreak

le Pettengill, Emily A., Hoffmann, Maria, Binet, Rachel, Roberts, Richard J., Payne, Justin, Allard, Marc, Michelacci, Valeria, Minelli, Fabio, Morabito, Stefano
Foilsithe in Genome Announc (2015)

Draft Genome Sequences of 40 Salmonella enterica Serovar Typhimurium Strains Isolated from Humans and Food in Brazil

le Almeida, Fernanda, Medeiros, Marta Inês Cazentini, Rodrigues, Dália Prazeres, Payne, Justin, Timme, Ruth E., Allard, Marc W., Falcão, Juliana Pfrimer
Foilsithe in Genome Announc (2016)

Draft Genome Sequences of Two O104:H21 Escherichia coli Isolates Causing Hemorrhagic Colitis during a 1994 Montana Outbreak Provide Insight into Their Pathogenicity

le Gonzalez-Escalona, Narjol, McFarland, Melinda A., Rump, Lydia V., Payne, Justin, Andrzejewski, Denis, Brown, Eric W., Evans, Peter S., Croley, Timothy R.
Foilsithe 2013

First Fully Closed Genome Sequence of Salmonella enterica subsp. enterica Serovar Cubana Associated with a Food-Borne Outbreak

le Hoffmann, Maria, Muruvanda, Tim, Pirone, Cary, Korlach, Jonas, Timme, Ruth, Payne, Justin, Evans, Peter, Meng, Jianghong, Brown, Eric W., Allard, Marc W.
Foilsithe 2014

Draft Genome Sequences of Salmonella enterica subsp. enterica Serovars Typhimurium and Nottingham Isolated from Food Products

le Wang, Hua, Zheng, Jie, Ayers, Sherry, Melka, David C., Curry, Phillip E., Payne, Justin S., Laasri, Anna, Wang, Charles, Hammack, Thomas S., Brown, Eric W.
Foilsithe in Genome Announc (2016)

Quantifying the Sensitivity of Soil Microbial Communities to Silver Sulfide Nanoparticles Using Metagenome Sequencing

le Doolette, Casey L., Gupta, Vadakattu V. S. R., Lu, Yang, Payne, Justin L., Batstone, Damien J., Kirby, Jason K., Navarro, Divina A., McLaughlin, Mike J.
Foilsithe in PLoS One (2016)

GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians

le Gangiredla, Jayanthi, Rand, Hugh, Benisatto, Daniel, Payne, Justin, Strittmatter, Charles, Sanders, Jimmy, Wolfgang, William J., Libuit, Kevin, Herrick, James B., Prarat, Melanie, Toro, Magaly, Farrell, Thomas, Strain, Errol
Foilsithe in BMC Genomics (2021)

Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5− Strain Isolated from Chicken Breast

le Hoffmann, Maria, Muruvanda, Tim, Allard, Marc W., Korlach, Jonas, Roberts, Richard J., Timme, Ruth, Payne, Justin, McDermott, Patrick F., Evans, Peter, Meng, Jianghong, Brown, Eric W., Zhao, Shaohua
Foilsithe 2013

Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5− Strain Isolated from Chicken Breast

le Hoffmann, Maria, Muruvanda, Tim, Allard, Marc W., Korlach, Jonas, Roberts, Richard J., Timme, Ruth, Payne, Justin, McDermott, Patrick F., Evans, Peter, Meng, Jianghong, Brown, Eric W., Zhao, Shaohua
Foilsithe 2014

Complete Sequences of Six IncA/C Plasmids of Multidrug-Resistant Salmonella enterica subsp. enterica Serotype Newport

le Cao, Guojie, Allard, Marc W., Hoffmann, Maria, Monday, Steven R., Muruvanda, Tim, Luo, Yan, Payne, Justin, Rump, Lydia, Meng, Kevin, Zhao, Shaohua, McDermott, Patrick F., Brown, Eric W., Meng, Jianghong
Foilsithe in Genome Announc (2015)

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Give, Isolated from an Imported Chili Powder Product

le Wang, Hua, Chen, Yi, Ayers, Sherry, Melka, David, Laasri, Anna, Payne, Justin S., Zheng, Jie, Son, Insook, Timme, Ruth, Kastanis, George, Hammack, Thomas S., Strain, Errol, Allard, Marc W., Evans, Peter S., Brown, Eric W.
Foilsithe in Genome Announc (2015)

Erratum for Miller et al., “Phylogenetic and Biogeographic Patterns of Vibrio parahaemolyticus Strains from North America Inferred from Whole-Genome Sequence Data”

le Miller, John J., Weimer, Bart C., Timme, Ruth, Lüdeke, Catharina H. M., Pettengill, James B., Bandoy, DJ Darwin, Weis, Allison M., Kaufman, James, Huang, B. Carol, Payne, Justin, Strain, Errol, Jones, Jessica L.
Foilsithe in Appl Environ Microbiol (2021)

Phylogenetic and Biogeographic Patterns of Vibrio parahaemolyticus Strains from North America Inferred from Whole-Genome Sequence Data

le Miller, John J., Weimer, Bart C., Timme, Ruth, Lüdeke, Catharina H. M., Pettengill, James B., Bandoy, D. J. Darwin, Weis, Allison M., Kaufman, James, Huang, B. Carol, Payne, Justin, Strain, Errol, Jones, Jessica L.
Foilsithe in Appl Environ Microbiol (2021)

Genome-Wide Methylation Patterns in Salmonella enterica Subsp. enterica Serovars

le Pirone-Davies, Cary, Hoffmann, Maria, Roberts, Richard J., Muruvanda, Tim, Timme, Ruth E., Strain, Errol, Luo, Yan, Payne, Justin, Luong, Khai, Song, Yi, Tsai, Yu-Chih, Boitano, Matthew, Clark, Tyson A., Korlach, Jonas, Evans, Peter S., Allard, Marc W.
Foilsithe in PLoS One (2015)

Fully Assembled Genome Sequence for Salmonella enterica subsp. enterica Serovar Javiana CFSAN001992

le Allard, Marc W., Muruvanda, Tim, Strain, Errol, Timme, Ruth, Luo, Yan, Wang, Charles, Keys, Christine E., Payne, Justin, Cooper, Tony, Luong, Khai, Song, Yi, Chin, Chen-Shan, Korlach, Jonas, Roberts, Rich J., Evans, Peter, Musser, Steven M., Brown, Eric W.
Foilsithe 2013