In Silico Serotyping Based on Whole-Genome Sequencing Improves the Accuracy of Shigella Identification

von Wu, Yun, Lau, Henry K., Lee, Teresa, Lau, David K., Payne, Justin
Veröffentlicht in Appl Environ Microbiol (2019)

Complete Genome and Methylome Sequences of Two Salmonella enterica spp.

von Yao, Kuan, Muruvanda, Tim, Roberts, Richard J., Payne, Justin, Allard, Marc W., Hoffmann, Maria
Veröffentlicht in Genome Announc (2016)

Complete Genome and Methylome Sequences of Salmonella enterica subsp. enterica Serovar Panama (ATCC 7378) and Salmonella enterica subsp. enterica Serovar Sloterdijk (ATCC 15791)

von Yao, Kuan, Muruvanda, Tim, Roberts, Richard J., Payne, Justin, Allard, Marc W., Hoffmann, Maria
Veröffentlicht in Genome Announc (2016)

Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Agona 460004 2-1, Associated with a Multistate Outbreak in the United States

von Hoffmann, Maria, Payne, Justin, Roberts, Richard J., Allard, Marc W., Brown, Eric W., Pettengill, James B.
Veröffentlicht in Genome Announc (2015)

Draft Genome Sequences of Clinical Vibrio parahaemolyticus Strains Isolated in Maryland (2010–2013)

von Haendiges, Julie, Timme, Ruth, Allard, Marc, Myers, Robert A., Payne, Justin, Brown, Eric W., Evans, Peter, Gonzalez-Escalona, Narjol
Veröffentlicht 2014

Complete Genome Sequence of Enteroinvasive Escherichia coli O96:H19 Associated with a Severe Foodborne Outbreak

von Pettengill, Emily A., Hoffmann, Maria, Binet, Rachel, Roberts, Richard J., Payne, Justin, Allard, Marc, Michelacci, Valeria, Minelli, Fabio, Morabito, Stefano
Veröffentlicht in Genome Announc (2015)

Draft Genome Sequences of 40 Salmonella enterica Serovar Typhimurium Strains Isolated from Humans and Food in Brazil

von Almeida, Fernanda, Medeiros, Marta Inês Cazentini, Rodrigues, Dália Prazeres, Payne, Justin, Timme, Ruth E., Allard, Marc W., Falcão, Juliana Pfrimer
Veröffentlicht in Genome Announc (2016)

Draft Genome Sequences of Two O104:H21 Escherichia coli Isolates Causing Hemorrhagic Colitis during a 1994 Montana Outbreak Provide Insight into Their Pathogenicity

von Gonzalez-Escalona, Narjol, McFarland, Melinda A., Rump, Lydia V., Payne, Justin, Andrzejewski, Denis, Brown, Eric W., Evans, Peter S., Croley, Timothy R.
Veröffentlicht 2013

First Fully Closed Genome Sequence of Salmonella enterica subsp. enterica Serovar Cubana Associated with a Food-Borne Outbreak

von Hoffmann, Maria, Muruvanda, Tim, Pirone, Cary, Korlach, Jonas, Timme, Ruth, Payne, Justin, Evans, Peter, Meng, Jianghong, Brown, Eric W., Allard, Marc W.
Veröffentlicht 2014

Draft Genome Sequences of Salmonella enterica subsp. enterica Serovars Typhimurium and Nottingham Isolated from Food Products

von Wang, Hua, Zheng, Jie, Ayers, Sherry, Melka, David C., Curry, Phillip E., Payne, Justin S., Laasri, Anna, Wang, Charles, Hammack, Thomas S., Brown, Eric W.
Veröffentlicht in Genome Announc (2016)

Quantifying the Sensitivity of Soil Microbial Communities to Silver Sulfide Nanoparticles Using Metagenome Sequencing

von Doolette, Casey L., Gupta, Vadakattu V. S. R., Lu, Yang, Payne, Justin L., Batstone, Damien J., Kirby, Jason K., Navarro, Divina A., McLaughlin, Mike J.
Veröffentlicht in PLoS One (2016)

GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians

von Gangiredla, Jayanthi, Rand, Hugh, Benisatto, Daniel, Payne, Justin, Strittmatter, Charles, Sanders, Jimmy, Wolfgang, William J., Libuit, Kevin, Herrick, James B., Prarat, Melanie, Toro, Magaly, Farrell, Thomas, Strain, Errol
Veröffentlicht in BMC Genomics (2021)

Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5− Strain Isolated from Chicken Breast

von Hoffmann, Maria, Muruvanda, Tim, Allard, Marc W., Korlach, Jonas, Roberts, Richard J., Timme, Ruth, Payne, Justin, McDermott, Patrick F., Evans, Peter, Meng, Jianghong, Brown, Eric W., Zhao, Shaohua
Veröffentlicht 2013

Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5− Strain Isolated from Chicken Breast

von Hoffmann, Maria, Muruvanda, Tim, Allard, Marc W., Korlach, Jonas, Roberts, Richard J., Timme, Ruth, Payne, Justin, McDermott, Patrick F., Evans, Peter, Meng, Jianghong, Brown, Eric W., Zhao, Shaohua
Veröffentlicht 2014

Complete Sequences of Six IncA/C Plasmids of Multidrug-Resistant Salmonella enterica subsp. enterica Serotype Newport

von Cao, Guojie, Allard, Marc W., Hoffmann, Maria, Monday, Steven R., Muruvanda, Tim, Luo, Yan, Payne, Justin, Rump, Lydia, Meng, Kevin, Zhao, Shaohua, McDermott, Patrick F., Brown, Eric W., Meng, Jianghong
Veröffentlicht in Genome Announc (2015)

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Give, Isolated from an Imported Chili Powder Product

von Wang, Hua, Chen, Yi, Ayers, Sherry, Melka, David, Laasri, Anna, Payne, Justin S., Zheng, Jie, Son, Insook, Timme, Ruth, Kastanis, George, Hammack, Thomas S., Strain, Errol, Allard, Marc W., Evans, Peter S., Brown, Eric W.
Veröffentlicht in Genome Announc (2015)

Erratum for Miller et al., “Phylogenetic and Biogeographic Patterns of Vibrio parahaemolyticus Strains from North America Inferred from Whole-Genome Sequence Data”

von Miller, John J., Weimer, Bart C., Timme, Ruth, Lüdeke, Catharina H. M., Pettengill, James B., Bandoy, DJ Darwin, Weis, Allison M., Kaufman, James, Huang, B. Carol, Payne, Justin, Strain, Errol, Jones, Jessica L.
Veröffentlicht in Appl Environ Microbiol (2021)

Phylogenetic and Biogeographic Patterns of Vibrio parahaemolyticus Strains from North America Inferred from Whole-Genome Sequence Data

von Miller, John J., Weimer, Bart C., Timme, Ruth, Lüdeke, Catharina H. M., Pettengill, James B., Bandoy, D. J. Darwin, Weis, Allison M., Kaufman, James, Huang, B. Carol, Payne, Justin, Strain, Errol, Jones, Jessica L.
Veröffentlicht in Appl Environ Microbiol (2021)

Genome-Wide Methylation Patterns in Salmonella enterica Subsp. enterica Serovars

von Pirone-Davies, Cary, Hoffmann, Maria, Roberts, Richard J., Muruvanda, Tim, Timme, Ruth E., Strain, Errol, Luo, Yan, Payne, Justin, Luong, Khai, Song, Yi, Tsai, Yu-Chih, Boitano, Matthew, Clark, Tyson A., Korlach, Jonas, Evans, Peter S., Allard, Marc W.
Veröffentlicht in PLoS One (2015)

Fully Assembled Genome Sequence for Salmonella enterica subsp. enterica Serovar Javiana CFSAN001992

von Allard, Marc W., Muruvanda, Tim, Strain, Errol, Timme, Ruth, Luo, Yan, Wang, Charles, Keys, Christine E., Payne, Justin, Cooper, Tony, Luong, Khai, Song, Yi, Chin, Chen-Shan, Korlach, Jonas, Roberts, Rich J., Evans, Peter, Musser, Steven M., Brown, Eric W.
Veröffentlicht 2013