Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database

Por Vishnyakova, Dina, Pasche, Emilie, Ruch, Patrick
Publicado em 2012

Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases

Por Gobeill, Julien, Pasche, Emilie, Vishnyakova, Dina, Ruch, Patrick
Publicado em 2013

Closing the loop: from paper to protein annotation using supervised Gene Ontology classification

Por Gobeill, Julien, Pasche, Emilie, Vishnyakova, Dina, Ruch, Patrick
Publicado em 2014

QA-driven Guidelines Generation for Bacteriotherapy

Por Pasche, Emilie, Teodoro, Douglas, Gobeill, Julien, Ruch, Patrick, Lovis, Christian
Publicado em 2009

Building a Transnational Biosurveillance Network Using Semantic Web Technologies: Requirements, Design, and Preliminary Evaluation

Por Teodoro, Douglas, Pasche, Emilie, Gobeill, Julien, Emonet, Stéphane, Ruch, Patrick, Lovis, Christian
Publicado em 2012

SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts

Por Gobeill, Julien, Caucheteur, Déborah, Michel, Pierre-André, Mottin, Luc, Pasche, Emilie, Ruch, Patrick
Publicado no Nucleic Acids Res (2020)

Deep Question Answering for protein annotation

Por Gobeill, Julien, Gaudinat, Arnaud, Pasche, Emilie, Vishnyakova, Dina, Gaudet, Pascale, Bairoch, Amos, Ruch, Patrick
Publicado no Database (Oxford) (2015)

Development and tuning of an original search engine for patent libraries in medicinal chemistry

Por Pasche, Emilie, Gobeill, Julien, Kreim, Olivier, Oezdemir-Zaech, Fatma, Vachon, Therese, Lovis, Christian, Ruch, Patrick
Publicado em 2014

neXtA(5): accelerating annotation of articles via automated approaches in neXtProt

Por Mottin, Luc, Gobeill, Julien, Pasche, Emilie, Michel, Pierre-André, Cusin, Isabelle, Gaudet, Pascale, Ruch, Patrick
Publicado no Database (Oxford) (2016)

UPCLASS: a deep learning-based classifier for UniProtKB entry publications

Por Teodoro, Douglas, Knafou, Julien, Naderi, Nona, Pasche, Emilie, Gobeill, Julien, Arighi, Cecilia N, Ruch, Patrick
Publicado no Database (Oxford) (2020)

Assisted Knowledge Discovery for the Maintenance of Clinical Guidelines

Por Pasche, Emilie, Ruch, Patrick, Teodoro, Douglas, Huttner, Angela, Harbarth, Stephan, Gobeill, Julien, Wipfli, Rolf, Lovis, Christian
Publicado em 2013

Correction: Assisted Knowledge Discovery for the Maintenance of Clinical Guidelines

Por Pasche, Emilie, Ruch, Patrick, Teodoro, Douglas, Huttner, Angela, Harbarth, Stephan, Gobeill, Julien, Wipfli, Rolf, Lovis, Christian
Publicado em 2013

Triage by ranking to support the curation of protein interactions

Por Mottin, Luc, Pasche, Emilie, Gobeill, Julien, Rech de Laval, Valentine, Gleizes, Anne, Michel, Pierre-André, Bairoch, Amos, Gaudet, Pascale, Ruch, Patrick
Publicado no Database (Oxford) (2017)

Accelerating annotation of articles via automated approaches: evaluation of the neXtA(5) curation-support tool by neXtProt

Por Britan, Aurore, Cusin, Isabelle, Hinard, Valérie, Mottin, Luc, Pasche, Emilie, Gobeill, Julien, Rech de Laval, Valentine, Gleizes, Anne, Teixeira, Daniel, Michel, Pierre-André, Ruch, Patrick, Gaudet, Pascale
Publicado no Database (Oxford) (2018)

DisProt: intrinsic protein disorder annotation in 2020

Por Hatos, András, Hajdu-Soltész, Borbála, Monzon, Alexander M, Palopoli, Nicolas, Álvarez, Lucía, Aykac-Fas, Burcu, Bassot, Claudio, Benítez, Guillermo I, Bevilacqua, Martina, Chasapi, Anastasia, Chemes, Lucia, Davey, Norman E, Davidović, Radoslav, Dunker, A Keith, Elofsson, Arne, Gobeill, Julien, Foutel, Nicolás S González, Sudha, Govindarajan, Guharoy, Mainak, Horvath, Tamas, Iglesias, Valentin, Kajava, Andrey V, Kovacs, Orsolya P, Lamb, John, Lambrughi, Matteo, Lazar, Tamas, Leclercq, Jeremy Y, Leonardi, Emanuela, Macedo-Ribeiro, Sandra, Macossay-Castillo, Mauricio, Maiani, Emiliano, Manso, José A, Marino-Buslje, Cristina, Martínez-Pérez, Elizabeth, Mészáros, Bálint, Mičetić, Ivan, Minervini, Giovanni, Murvai, Nikoletta, Necci, Marco, Ouzounis, Christos A, Pajkos, Mátyás, Paladin, Lisanna, Pancsa, Rita, Papaleo, Elena, Parisi, Gustavo, Pasche, Emilie, Barbosa Pereira, Pedro J, Promponas, Vasilis J, Pujols, Jordi, Quaglia, Federica, Ruch, Patrick, Salvatore, Marco, Schad, Eva, Szabo, Beata, Szaniszló, Tamás, Tamana, Stella, Tantos, Agnes, Veljkovic, Nevena, Ventura, Salvador, Vranken, Wim, Dosztányi, Zsuzsanna, Tompa, Peter, Tosatto, Silvio C E, Piovesan, Damiano
Publicado no Nucleic Acids Res (2020)