BBK* (Branch and Bound Over K*): A Provable and Efficient Ensemble-Based Protein Design Algorithm to Optimize Stability and Binding Affinity Over Large Sequence Spaces

par Ojewole, Adegoke A., Jou, Jonathan D., Fowler, Vance G., Donald, Bruce R.
Publié dans J Comput Biol (2018)

Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface

par Lowegard, Anna U., Frenkel, Marcel S., Holt, Graham T., Jou, Jonathan D., Ojewole, Adegoke A., Donald, Bruce R.
Publié dans PLoS Comput Biol (2020)

OSPREY Predicts Resistance Mutations using Positive and Negative Computational Protein Design

par Ojewole, Adegoke, Lowegard, Anna, Gainza, Pablo, Reeve, Stephanie M., Georgiev, Ivelin, Anderson, Amy C., Donald, Bruce R.
Publié dans Methods Mol Biol (2017)

osprey 3.0: Open-Source Protein Redesign for You, with Powerful New Features

par Hallen, Mark A., Martin, Jeffrey W., Ojewole, Adegoke, Jou, Jonathan D., Lowegard, Anna U., Frenkel, Marcel S., Gainza, Pablo, Nisonoff, Hunter M., Mukund, Aditya, Wang, Siyu, Holt, Graham T., Zhou, David, Dowd, Elizabeth, Donald, Bruce R.
Publié dans J Comput Chem (2018)

Toward Broad Spectrum DHFR inhibitors Targeting Trimethoprim Resistant Enzymes Identified in Clinical Isolates of Methicillin-Resistant Staphylococcus aureus

par Reeve, Stephanie M., Si, Debjani, Krucinska, Jolanta, Yan, Yongzhao, Viswanathan, Kishore, Wang, Siyu, Holt, Graham T., Frenkel, Marcel S., Ojewole, Adegoke A., Estrada, Alexavier, Agabiti, Sherry S., Alverson, Jeremy B., Gibson, Nathan D., Priestly, Nigel D., Wiemer, Andrew J., Donald, Bruce R., Wright, Dennis L.
Publié dans ACS Infect Dis (2019)