BBK* (Branch and Bound Over K*): A Provable and Efficient Ensemble-Based Protein Design Algorithm to Optimize Stability and Binding Affinity Over Large Sequence Spaces

Por Ojewole, Adegoke A., Jou, Jonathan D., Fowler, Vance G., Donald, Bruce R.
Publicado no J Comput Biol (2018)

Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface

Por Lowegard, Anna U., Frenkel, Marcel S., Holt, Graham T., Jou, Jonathan D., Ojewole, Adegoke A., Donald, Bruce R.
Publicado no PLoS Comput Biol (2020)

OSPREY Predicts Resistance Mutations using Positive and Negative Computational Protein Design

Por Ojewole, Adegoke, Lowegard, Anna, Gainza, Pablo, Reeve, Stephanie M., Georgiev, Ivelin, Anderson, Amy C., Donald, Bruce R.
Publicado no Methods Mol Biol (2017)

osprey 3.0: Open-Source Protein Redesign for You, with Powerful New Features

Por Hallen, Mark A., Martin, Jeffrey W., Ojewole, Adegoke, Jou, Jonathan D., Lowegard, Anna U., Frenkel, Marcel S., Gainza, Pablo, Nisonoff, Hunter M., Mukund, Aditya, Wang, Siyu, Holt, Graham T., Zhou, David, Dowd, Elizabeth, Donald, Bruce R.
Publicado no J Comput Chem (2018)

Toward Broad Spectrum DHFR inhibitors Targeting Trimethoprim Resistant Enzymes Identified in Clinical Isolates of Methicillin-Resistant Staphylococcus aureus

Por Reeve, Stephanie M., Si, Debjani, Krucinska, Jolanta, Yan, Yongzhao, Viswanathan, Kishore, Wang, Siyu, Holt, Graham T., Frenkel, Marcel S., Ojewole, Adegoke A., Estrada, Alexavier, Agabiti, Sherry S., Alverson, Jeremy B., Gibson, Nathan D., Priestly, Nigel D., Wiemer, Andrew J., Donald, Bruce R., Wright, Dennis L.
Publicado no ACS Infect Dis (2019)