BBK* (Branch and Bound Over K*): A Provable and Efficient Ensemble-Based Protein Design Algorithm to Optimize Stability and Binding Affinity Over Large Sequence Spaces

gan Ojewole, Adegoke A., Jou, Jonathan D., Fowler, Vance G., Donald, Bruce R.
Cyhoeddwyd yn J Comput Biol (2018)

Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface

gan Lowegard, Anna U., Frenkel, Marcel S., Holt, Graham T., Jou, Jonathan D., Ojewole, Adegoke A., Donald, Bruce R.
Cyhoeddwyd yn PLoS Comput Biol (2020)

OSPREY Predicts Resistance Mutations using Positive and Negative Computational Protein Design

gan Ojewole, Adegoke, Lowegard, Anna, Gainza, Pablo, Reeve, Stephanie M., Georgiev, Ivelin, Anderson, Amy C., Donald, Bruce R.
Cyhoeddwyd yn Methods Mol Biol (2017)

osprey 3.0: Open-Source Protein Redesign for You, with Powerful New Features

gan Hallen, Mark A., Martin, Jeffrey W., Ojewole, Adegoke, Jou, Jonathan D., Lowegard, Anna U., Frenkel, Marcel S., Gainza, Pablo, Nisonoff, Hunter M., Mukund, Aditya, Wang, Siyu, Holt, Graham T., Zhou, David, Dowd, Elizabeth, Donald, Bruce R.
Cyhoeddwyd yn J Comput Chem (2018)

Toward Broad Spectrum DHFR inhibitors Targeting Trimethoprim Resistant Enzymes Identified in Clinical Isolates of Methicillin-Resistant Staphylococcus aureus

gan Reeve, Stephanie M., Si, Debjani, Krucinska, Jolanta, Yan, Yongzhao, Viswanathan, Kishore, Wang, Siyu, Holt, Graham T., Frenkel, Marcel S., Ojewole, Adegoke A., Estrada, Alexavier, Agabiti, Sherry S., Alverson, Jeremy B., Gibson, Nathan D., Priestly, Nigel D., Wiemer, Andrew J., Donald, Bruce R., Wright, Dennis L.
Cyhoeddwyd yn ACS Infect Dis (2019)