Haplotype and minimum-chimerism consensus determination using short sequence data

od O'Neil, Shawn T, Emrich, Scott J
Wydane 2012

Assessing De Novo transcriptome assembly metrics for consistency and utility

od O’Neil, Shawn T, Emrich, Scott J
Wydane 2013

Habitat Capacity for Cougar Recolonization in the Upper Great Lakes Region

od O′Neil, Shawn T., Rahn, Kasey C., Bump, Joseph K.
Wydane w PLoS One (2014)

Spatially varying density dependence drives a shifting mosaic of survival in a recovering apex predator (Canis lupus)

od O'Neil, Shawn T., Bump, Joseph K., Beyer, Dean E.
Wydane w Ecol Evol (2017)

Territorial landscapes: incorporating density-dependence into wolf habitat selection studies

od O'Neil, Shawn T., Beyer, Dean E., Bump, Joseph K.
Wydane w R Soc Open Sci (2019)

Nesting, brood rearing, and summer habitat selection by translocated greater sage‐grouse in North Dakota, USA

od Lazenby, Kade D., Coates, Peter S., O’Neil, Shawn T., Kohl, Michel T., Dahlgren, David K.
Wydane w Ecol Evol (2021)

A comparative study of ripening among berries of the grape cluster reveals an altered transcriptional programme and enhanced ripening rate in delayed berries

od Gouthu, Satyanarayana, O’Neil, Shawn T., Di, Yanming, Ansarolia, Mitra, Megraw, Molly, Deluc, Laurent G.
Wydane 2014

Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon

od O'Neil, Shawn T, Dzurisin, Jason DK, Carmichael, Rory D, Lobo, Neil F, Emrich, Scott J, Hellmann, Jessica J
Wydane 2010

Myocarditis in CD8-Depleted SIV-Infected Rhesus Macaques after Short-Term Dual Therapy with Nucleoside and Nucleotide Reverse Transcriptase Inhibitors

od Annamalai, Lakshmanan, Westmoreland, Susan V., Domingues, Heber G., Walsh, Dennis G., Gonzalez, R. Gilberto, O'Neil, Shawn P.
Wydane 2010

Neurometabolite Abnormalities in Simian Immunodeficiency Virus-Infected Macaques with Chronic Morphine Administration

od Cloak, Christine C., Chang, Linda, O’Neil, Shawn P., Ernst, Thomas M., Anderson, Daniel C., Donahoe, Robert M.
Wydane 2010

Two Theobroma cacao genotypes with contrasting pathogen tolerance show aberrant transcriptional and ROS responses after salicylic acid treatment

od Fister, Andrew S., O’Neil, Shawn T., Shi, Zi, Zhang, Yufan, Tyler, Brett M., Guiltinan, Mark J., Maximova, Siela N.
Wydane w J Exp Bot (2015)

A k-mer based transcriptomics approach for antisense drug discovery targeting the Ewing’s family of tumors

od Annalora, Andrew J., O’Neil, Shawn, Bushman, Jeremy D., Summerton, James E., Marcus, Craig B., Iversen, Patrick L.
Wydane w Oncotarget (2018)

Isolation and Characterization of a Neuropathogenic Simian Immunodeficiency Virus Derived from a Sooty Mangabey

od Novembre, Francis J., De Rosayro, Juliette, O’Neil, Shawn P., Anderson, Daniel C., Klumpp, Sherry A., McClure, Harold M.
Wydane 1998

Evolution of a TRIM5-CypA Splice Isoform in Old World Monkeys

od Newman, Ruchi M., Hall, Laura, Kirmaier, Andrea, Pozzi, Lu-Ann, Pery, Erez, Farzan, Michael, O'Neil, Shawn P., Johnson, Welkin
Wydane 2008

Differential CD4(+) T-Lymphocyte Apoptosis and Bystander T-Cell Activation in Rhesus Macaques and Sooty Mangabeys during Acute Simian Immunodeficiency Virus Infection

od Meythaler, Mareike, Martinot, Amanda, Wang, Zichun, Pryputniewicz, Sarah, Kasheta, Melissa, Ling, Binhua, Marx, Preston A., O'Neil, Shawn, Kaur, Amitinder
Wydane 2009

Early Induction of Polyfunctional SIV-specific T Lymphocytes and Rapid Disappearance of SIV from Lymph Nodes of Sooty Mangabeys During Primary Infection

od Meythaler, Mareike, Wang, Zichun, Martinot, Amanda, Pryputniewicz, Sarah, Kasheta, Melissa, McClure, Harold M., O’Neil, Shawn P., Kaur, Amitinder
Wydane 2011

Wildfire and the ecological niche: Diminishing habitat suitability for an indicator species within semi‐arid ecosystems

od O’Neil, Shawn T., Coates, Peter S., Brussee, Brianne E., Ricca, Mark A., Espinosa, Shawn P., Gardner, Scott C., Delehanty, David J.
Wydane w Glob Chang Biol (2020)

Reduced Genetic Diversity in Lymphoid and Central Nervous System Tissues and Selection-Induced Tissue-Specific Compartmentalization of Neuropathogenic SIVsmmFGb during Acute Infect...

od Reeve, Aaron B., Patel, Kalpana, Pearce, Nicholas C., Augustus, Katherine V., Domingues, Heber G., O'Neil, Shawn P., Novembre, Francis J.
Wydane 2009

Correlation of Acute Humoral Response with Brain Virus Burden and Survival Time in Pig-Tailed Macaques Infected with the Neurovirulent Simian Immunodeficiency Virus SIVsmmFGb

od O’Neil, Shawn P., Suwyn, Carolyn, Anderson, Daniel C., Niedziela, Genevieve, Bradley, Juliette, Novembre, Francis J., Herndon, James G., McClure, Harold M.
Wydane 2004

Identification of tubular injury microRNA biomarkers in urine: comparison of next-generation sequencing and qPCR-based profiling platforms

od Nassirpour, Rounak, Mathur, Sachin, Gosink, Mark M, Li, Yizheng, Shoieb, Ahmed M, Wood, Joanna, O’Neil, Shawn P, Homer, Bruce L, Whiteley, Laurence O
Wydane 2014