The Dark Proteome Database

Por Perdigão, Nelson, Rosa, Agostinho C., O’Donoghue, Seán I.
Publicado no BioData Min (2017)

The PSSH database of alignments between protein sequences and tertiary structures

Por Schafferhans, Andrea, Meyer, Joachim E. W., O'Donoghue, Seán I.
Publicado em 2003

Integrated visual analysis of protein structures, sequences, and feature data

Por Stolte, Christian, Sabir, Kenneth S, Heinrich, Julian, Hammang, Christopher J, Schafferhans, Andrea, O'Donoghue, Seán I
Publicado no BMC Bioinformatics (2015)

Comprehensive comparison of large-scale tissue expression datasets

Por Santos, Alberto, Tsafou, Kalliopi, Stolte, Christian, Pletscher-Frankild, Sune, O’Donoghue, Seán I., Jensen, Lars Juhl
Publicado no PeerJ (2015)

Arena3D: visualization of biological networks in 3D

Por Pavlopoulos, Georgios A, O'Donoghue, Seán I, Satagopam, Venkata P, Soldatos, Theodoros G, Pafilis, Evangelos, Schneider, Reinhard
Publicado em 2008

COMPARTMENTS: unification and visualization of protein subcellular localization evidence

Por Binder, Janos X., Pletscher-Frankild, Sune, Tsafou, Kalliopi, Stolte, Christian, O’Donoghue, Seán I., Schneider, Reinhard, Jensen, Lars Juhl
Publicado em 2014

Martini: using literature keywords to compare gene sets

Por Soldatos, Theodoros G., O’Donoghue, Seán I., Satagopam, Venkata P., Jensen, Lars J., Brown, Nigel P., Barbosa-Silva, Adriano, Schneider, Reinhard
Publicado em 2010

Defective Lamin A-Rb Signaling in Hutchinson-Gilford Progeria Syndrome and Reversal by Farnesyltransferase Inhibition

Por Marji, Jackleen, O'Donoghue, Seán I., McClintock, Dayle, Satagopam, Venkata P., Schneider, Reinhard, Ratner, Desiree, J. Worman, Howard, Gordon, Leslie B., Djabali, Karima
Publicado em 2010

Caipirini: using gene sets to rank literature

Por Soldatos, Theodoros G, O'Donoghue, Seán I, Satagopam, Venkata P, Barbosa-Silva, Adriano, Pavlopoulos, Georgios A, Wanderley-Nogueira, Ana Carolina, Soares-Cavalcanti, Nina Mota, Schneider, Reinhard
Publicado em 2012

Unexpected features of the dark proteome

Por Perdigão, Nelson, Heinrich, Julian, Stolte, Christian, Sabir, Kenneth S., Buckley, Michael J., Tabor, Bruce, Signal, Beth, Gloss, Brian S., Hammang, Christopher J., Rost, Burkhard, Schafferhans, Andrea, O’Donoghue, Seán I.
Publicado no Proc Natl Acad Sci U S A (2015)

Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations

Por Taberlay, Phillippa C., Achinger-Kawecka, Joanna, Lun, Aaron T.L., Buske, Fabian A., Sabir, Kenneth, Gould, Cathryn M., Zotenko, Elena, Bert, Saul A., Giles, Katherine A., Bauer, Denis C., Smyth, Gordon K., Stirzaker, Clare, O'Donoghue, Sean I., Clark, Susan J.
Publicado no Genome Res (2016)

Text mining for biology - the way forward: opinions from leading scientists

Por Altman, Russ B, Bergman, Casey M, Blake, Judith, Blaschke, Christian, Cohen, Aaron, Gannon, Frank, Grivell, Les, Hahn, Udo, Hersh, William, Hirschman, Lynette, Jensen, Lars Juhl, Krallinger, Martin, Mons, Barend, O'Donoghue, Seán I, Peitsch, Manuel C, Rebholz-Schuhmann, Dietrich, Shatkay, Hagit, Valencia, Alfonso
Publicado em 2008