XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences

le Cooper James B, Newman Aaron M
Foilsithe 2007-10-01

AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number

le Cooper James B, Newman Aaron M
Foilsithe 2010-03-01

XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences

le Newman, Aaron M, Cooper, James B
Foilsithe 2007

AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number

le Newman, Aaron M, Cooper, James B
Foilsithe 2010

Global Analysis of Proline-Rich Tandem Repeat Proteins Reveals Broad Phylogenetic Diversity in Plant Secretomes

le Newman, Aaron M., Cooper, James B.
Foilsithe 2011

High Throughput Genomic Profiling of Tumor-Infiltrating Leukocytes

le Newman, Aaron M., Alizadeh, Ash A.
Foilsithe in Curr Opin Immunol (2016)

Computational approaches for characterizing the tumor immune microenvironment

le Liu, Candace C., Steen, Chloé B., Newman, Aaron M.
Foilsithe in Immunology (2019)

Potential clinical utility of ultrasensitive circulating tumor DNA detection with CAPP-Seq

le Bratman, Scott V., Newman, Aaron M., Alizadeh, Ash A., Diehn, Maximilian
Foilsithe in Expert Rev Mol Diagn (2015)

Targeted chromatin ligation, a robust epigenetic profiling technique for small cell numbers

le Zarnegar, Mark A., Reinitz, Felicia, Newman, Aaron M., Clarke, Michael F.
Foilsithe in Nucleic Acids Res (2017)

Genomic Feature Selection by Coverage Design Optimization

le Reid, Stephen, Newman, Aaron M., Diehn, Maximilian, Alizadeh, Ash A., Tibshirani, Robert
Foilsithe in J Appl Stat (2018)

Profiling Cell Type Abundance and Expression in Bulk Tissues with CIBERSORTx

le Steen, Chloé B., Liu, Chih Long, Alizadeh, Ash A., Newman, Aaron M.
Foilsithe in Methods Mol Biol (2020)

Profiling tumor infiltrating immune cells with CIBERSORT

le Chen, Binbin, Khodadoust, Michael S., Liu, Chih Long, Newman, Aaron M., Alizadeh, Ash A.
Foilsithe in Methods Mol Biol (2018)

Data normalization considerations for digital tumor dissection

le Newman, Aaron M., Gentles, Andrew J., Liu, Chih Long, Diehn, Maximilian, Alizadeh, Ash A.
Foilsithe in Genome Biol (2017)

A proteomic approach for the identification of novel lysine methyltransferase substrates

le Levy, Dan, Liu, Chih Long, Yang, Ze, Newman, Aaron M, Alizadeh, Ash A, Utz, Paul J, Gozani, Or
Foilsithe 2011

FACTERA: a practical method for the discovery of genomic rearrangements at breakpoint resolution

le Newman, Aaron M., Bratman, Scott V., Stehr, Henning, Lee, Luke J., Liu, Chih Long, Diehn, Maximilian, Alizadeh, Ash A.
Foilsithe in Bioinformatics (2014)

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

le Morris, John H, Apeltsin, Leonard, Newman, Aaron M, Baumbach, Jan, Wittkop, Tobias, Su, Gang, Bader, Gary D, Ferrin, Thomas E
Foilsithe 2011

Robust enumeration of cell subsets from tissue expression profiles

le Newman, Aaron M., Liu, Chih Long, Green, Michael R., Gentles, Andrew J., Feng, Weiguo, Xu, Yue, Hoang, Chuong D., Diehn, Maximilian, Alizadeh, Ash A.
Foilsithe in Nat Methods (2015)

Large-Scale and Comprehensive Immune Profiling and Functional Analysis of Normal Human Aging

le Whiting, Chan C., Siebert, Janet, Newman, Aaron M., Du, Hong-wu, Alizadeh, Ash A., Goronzy, Jorg, Weyand, Cornelia M., Krishnan, Eswar, Fathman, C. Garrison, Maecker, Holden T.
Foilsithe in PLoS One (2015)

Early B cell changes predict autoimmunity following combination immune checkpoint blockade

le Das, Rituparna, Bar, Noffar, Ferreira, Michelle, Newman, Aaron M., Zhang, Lin, Bailur, Jithendra Kini, Bacchiocchi, Antonella, Kluger, Harriet, Wei, Wei, Halaban, Ruth, Sznol, Mario, Dhodapkar, Madhav V., Dhodapkar, Kavita M.
Foilsithe in J Clin Invest (2018)

Systems-level analysis of age-related macular degeneration reveals global biomarkers and phenotype-specific functional networks

le Newman, Aaron M, Gallo, Natasha B, Hancox, Lisa S, Miller, Norma J, Radeke, Carolyn M, Maloney, Michelle A, Cooper, James B, Hageman, Gregory S, Anderson, Don H, Johnson, Lincoln V, Radeke, Monte J
Foilsithe 2012