XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences

gan Cooper James B, Newman Aaron M
Cyhoeddwyd 2007-10-01

AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number

gan Cooper James B, Newman Aaron M
Cyhoeddwyd 2010-03-01

XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences

gan Newman, Aaron M, Cooper, James B
Cyhoeddwyd 2007

AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number

gan Newman, Aaron M, Cooper, James B
Cyhoeddwyd 2010

Global Analysis of Proline-Rich Tandem Repeat Proteins Reveals Broad Phylogenetic Diversity in Plant Secretomes

gan Newman, Aaron M., Cooper, James B.
Cyhoeddwyd 2011

High Throughput Genomic Profiling of Tumor-Infiltrating Leukocytes

gan Newman, Aaron M., Alizadeh, Ash A.
Cyhoeddwyd yn Curr Opin Immunol (2016)

Computational approaches for characterizing the tumor immune microenvironment

gan Liu, Candace C., Steen, Chloé B., Newman, Aaron M.
Cyhoeddwyd yn Immunology (2019)

Potential clinical utility of ultrasensitive circulating tumor DNA detection with CAPP-Seq

gan Bratman, Scott V., Newman, Aaron M., Alizadeh, Ash A., Diehn, Maximilian
Cyhoeddwyd yn Expert Rev Mol Diagn (2015)

Targeted chromatin ligation, a robust epigenetic profiling technique for small cell numbers

gan Zarnegar, Mark A., Reinitz, Felicia, Newman, Aaron M., Clarke, Michael F.
Cyhoeddwyd yn Nucleic Acids Res (2017)

Genomic Feature Selection by Coverage Design Optimization

gan Reid, Stephen, Newman, Aaron M., Diehn, Maximilian, Alizadeh, Ash A., Tibshirani, Robert
Cyhoeddwyd yn J Appl Stat (2018)

Profiling Cell Type Abundance and Expression in Bulk Tissues with CIBERSORTx

gan Steen, Chloé B., Liu, Chih Long, Alizadeh, Ash A., Newman, Aaron M.
Cyhoeddwyd yn Methods Mol Biol (2020)

Profiling tumor infiltrating immune cells with CIBERSORT

gan Chen, Binbin, Khodadoust, Michael S., Liu, Chih Long, Newman, Aaron M., Alizadeh, Ash A.
Cyhoeddwyd yn Methods Mol Biol (2018)

Data normalization considerations for digital tumor dissection

gan Newman, Aaron M., Gentles, Andrew J., Liu, Chih Long, Diehn, Maximilian, Alizadeh, Ash A.
Cyhoeddwyd yn Genome Biol (2017)

A proteomic approach for the identification of novel lysine methyltransferase substrates

gan Levy, Dan, Liu, Chih Long, Yang, Ze, Newman, Aaron M, Alizadeh, Ash A, Utz, Paul J, Gozani, Or
Cyhoeddwyd 2011

FACTERA: a practical method for the discovery of genomic rearrangements at breakpoint resolution

gan Newman, Aaron M., Bratman, Scott V., Stehr, Henning, Lee, Luke J., Liu, Chih Long, Diehn, Maximilian, Alizadeh, Ash A.
Cyhoeddwyd yn Bioinformatics (2014)

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

gan Morris, John H, Apeltsin, Leonard, Newman, Aaron M, Baumbach, Jan, Wittkop, Tobias, Su, Gang, Bader, Gary D, Ferrin, Thomas E
Cyhoeddwyd 2011

Robust enumeration of cell subsets from tissue expression profiles

gan Newman, Aaron M., Liu, Chih Long, Green, Michael R., Gentles, Andrew J., Feng, Weiguo, Xu, Yue, Hoang, Chuong D., Diehn, Maximilian, Alizadeh, Ash A.
Cyhoeddwyd yn Nat Methods (2015)

Large-Scale and Comprehensive Immune Profiling and Functional Analysis of Normal Human Aging

gan Whiting, Chan C., Siebert, Janet, Newman, Aaron M., Du, Hong-wu, Alizadeh, Ash A., Goronzy, Jorg, Weyand, Cornelia M., Krishnan, Eswar, Fathman, C. Garrison, Maecker, Holden T.
Cyhoeddwyd yn PLoS One (2015)

Early B cell changes predict autoimmunity following combination immune checkpoint blockade

gan Das, Rituparna, Bar, Noffar, Ferreira, Michelle, Newman, Aaron M., Zhang, Lin, Bailur, Jithendra Kini, Bacchiocchi, Antonella, Kluger, Harriet, Wei, Wei, Halaban, Ruth, Sznol, Mario, Dhodapkar, Madhav V., Dhodapkar, Kavita M.
Cyhoeddwyd yn J Clin Invest (2018)

Systems-level analysis of age-related macular degeneration reveals global biomarkers and phenotype-specific functional networks

gan Newman, Aaron M, Gallo, Natasha B, Hancox, Lisa S, Miller, Norma J, Radeke, Carolyn M, Maloney, Michelle A, Cooper, James B, Hageman, Gregory S, Anderson, Don H, Johnson, Lincoln V, Radeke, Monte J
Cyhoeddwyd 2012