Current algorithmic solutions for peptide-based proteomics data generation and identification

Por Hoopmann, Michael R., Moritz, Robert L.
Publicado em 2012

High Field Asymmetric Waveform Ion Mobility Spectrometry (FAIMS) for Mass Spectrometry-Based Proteomics

Por Swearingen, Kristian E., Moritz, Robert L.
Publicado no Expert Rev Proteomics (2012)

Identification of peptide features in precursor spectra using Hardklör and Krönik

Por Hoopmann, Michael R., MacCoss, Michael J., Moritz, Robert L.
Publicado em 2012

Proteomic Analysis of Colorectal Cancer: Prefractionation Strategies Using two-Dimensional Free-Flow Electrophoresis

Por Moritz, Robert L., Skandarajah, Anita R., Ji, Hong, Simpson, Richard J.
Publicado em 2005

Combining Results of Multiple Search Engines in Proteomics

Por Shteynberg, David, Nesvizhskii, Alexey I., Moritz, Robert L., Deutsch, Eric W.
Publicado em 2013

Quantitative Proteomic Analysis of Host-virus Interactions Reveals a Role for Golgi Brefeldin A Resistance Factor 1 (GBF1) in Dengue Infection

Por Carpp, Lindsay N., Rogers, Richard S., Moritz, Robert L., Aitchison, John D.
Publicado no Mol Cell Proteomics (2014)

Role of the Plasmodium Export Element in Trafficking Parasite Proteins to the Infected Erythrocyte

Por Boddey, Justin A, Moritz, Robert L, Simpson, Richard J, Cowman, Alan F
Publicado em 2009

jTraML: An Open Source Java API for TraML, the PSI Standard for Sharing SRM Transitions

Por Helsens, Kenny, Brusniak, Mi-Youn, Deutsch, Eric, Moritz, Robert L., Martens, Lennart
Publicado em 2011

Processing Shotgun Proteomics Data on the Amazon Cloud with the Trans-Proteomic Pipeline

Por Slagel, Joseph, Mendoza, Luis, Shteynberg, David, Deutsch, Eric W., Moritz, Robert L.
Publicado no Mol Cell Proteomics (2015)

Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data-independent Acquisition Mass Spectrometry (MS) using SWATHProphet

Por Keller, Andrew, Bader, Samuel L., Shteynberg, David, Hood, Leroy, Moritz, Robert L.
Publicado no Mol Cell Proteomics (2015)

An open data format for visualization and analysis of cross-linked mass spectrometry results

Por Hoopmann, Michael R., Mendoza, Luis, Deutsch, Eric W., Shteynberg, David, Moritz, Robert L.
Publicado no J Am Soc Mass Spectrom (2016)

The Protein Information and Property Explorer 2: Gaggle-like exploration of biological proteomic data within one webpage

Por Ramos, Hector, Shannon, Paul, Brusniak, Mi-Youn, Kusebauch, Ulrike, Moritz, Robert L., Aebersold, Ruedi
Publicado em 2010

Mass fingerprinting of complex mixtures: protein inference from high-resolution peptide masses and predicted retention times

Por Moruz, Luminita, Hoopmann, Michael R., Rosenlund, Magnus, Granholm, Viktor, Moritz, Robert L., Käll, Lukas
Publicado em 2013

Using PeptideAtlas, SRMAtlas and PASSEL – Comprehensive Resources for discovery and targeted proteomics

Por Kusebauch, Ulrike, Deutsch, Eric W., Campbell, David S., Sun, Zhi, Farrah, Terry, Moritz, Robert L.
Publicado no Curr Protoc Bioinformatics (2014)

Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics

Por Deutsch, Eric W., Mendoza, Luis, Shteynberg, David, Slagel, Joseph, Sun, Zhi, Moritz, Robert L.
Publicado no Proteomics Clin Appl (2015)

Decreased gap width in a cylindrical FAIMS device improves protein discovery

Por Swearingen, Kristian E., Winget, Jason M., Hoopmann, Michael R., Kusebauch, Ulrike, Moritz, Robert L.
Publicado no Anal Chem (2015)

Opening a SWATH Window on Posttranslational Modifications: Automated Pursuit of Modified Peptides

Por Keller, Andrew, Bader, Samuel L., Kusebauch, Ulrike, Shteynberg, David, Hood, Leroy, Moritz, Robert L.
Publicado no Mol Cell Proteomics (2016)

Identification of a PRMT5-dependent repressor complex linked to silencing of human fetal globin gene expression

Por Rank, Gerhard, Cerruti, Loretta, Simpson, Richard J., Moritz, Robert L., Jane, Stephen M., Zhao, Quan
Publicado em 2010

Quantitative Proteomic Analysis Reveals Effects of Epidermal Growth Factor Receptor (EGFR) on Invasion-promoting Proteins Secreted by Glioblastoma Cells

Por Sangar, Vineet, Funk, Cory C., Kusebauch, Ulrike, Campbell, David S., Moritz, Robert L., Price, Nathan D.
Publicado em 2014

Mycobacterium tuberculosis supports protein tyrosine phosphorylation

Por Kusebauch, Ulrike, Ortega, Corrie, Ollodart, Anja, Rogers, Richard S., Sherman, David R., Moritz, Robert L., Grundner, Christoph
Publicado em 2014