Unbiased Deep Sequencing of RNA Viruses from Clinical Samples

Bằng Matranga, Christian B., Gladden-Young, Adrianne, Qu, James, Winnicki, Sarah, Nosamiefan, Dolo, Levin, Joshua Z., Sabeti, Pardis C.
Xuất bản năm J Vis Exp (2016)

Evidence of Ebola Virus Replication and High Concentration in Semen of a Patient During Recovery

Bằng Barnes, Kayla G, Kindrachuk, Jason, Lin, Aaron E, Wohl, Shirlee, Qu, James, Tostenson, Samantha D, Dorman, William R, Busby, Michele, Siddle, Katherine J, Luo, Cynthia Y, Matranga, Christian B, Davey, Richard T, Sabeti, Pardis C, Chertow, Daniel S
Xuất bản năm Clin Infect Dis (2017)

Rapid Detection of Powassan Virus in a Patient With Encephalitis by Metagenomic Sequencing

Bằng Piantadosi, Anne, Kanjilal, Sanjat, Ganesh, Vijay, Khanna, Arjun, Hyle, Emily P, Rosand, Jonathan, Bold, Tyler, Metsky, Hayden C, Lemieux, Jacob, Leone, Michael J, Freimark, Lisa, Matranga, Christian B, Adams, Gordon, McGrath, Graham, Zamirpour, Siavash, Telford, Sam, Rosenberg, Eric, Cho, Tracey, Frosch, Matthew P, Goldberg, Marcia B, Mukerji, Shibani S, Sabeti, Pardis C
Xuất bản năm Clin Infect Dis (2018)

Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples

Bằng Matranga, Christian B, Andersen, Kristian G, Winnicki, Sarah, Busby, Michele, Gladden, Adrianne D, Tewhey, Ryan, Stremlau, Matthew, Berlin, Aaron, Gire, Stephen K, England, Eleina, Moses, Lina M, Mikkelsen, Tarjei S, Odia, Ikponmwonsa, Ehiane, Philomena E, Folarin, Onikepe, Goba, Augustine, Kahn, S Humarr, Grant, Donald S, Honko, Anna, Hensley, Lisa, Happi, Christian, Garry, Robert F, Malboeuf, Christine M, Birren, Bruce W, Gnirke, Andreas, Levin, Joshua Z, Sabeti, Pardis C
Xuất bản năm Genome Biol (2014)

Ebola Virus Epidemiology and Evolution in Nigeria

Bằng Folarin, Onikepe A., Ehichioya, Deborah, Schaffner, Stephen F., Winnicki, Sarah M., Wohl, Shirlee, Eromon, Philomena, West, Kendra L., Gladden-Young, Adrianne, Oyejide, Nicholas E., Matranga, Christian B., Deme, Awa Bineta, James, Ayorinde, Tomkins-Tinch, Christopher, Onyewurunwa, Kenneth, Ladner, Jason T., Palacios, Gustavo, Nosamiefan, Iguosadolo, Andersen, Kristian G., Omilabu, Sunday, Park, Daniel J., Yozwiak, Nathan L., Nasidi, Abdusallam, Garry, Robert F., Tomori, Oyewale, Sabeti, Pardis C., Happi, Christian T.
Xuất bản năm J Infect Dis (2016)

Chikungunya Arthritis Mechanisms in the Americas: A cross-sectional analysis of chikungunya arthritis patients 22-months post-infection demonstrate no detectable viral persistence...

Bằng Chang, Aileen Y., Martins, Karen A.O., Encinales, Liliana, Reid, Patrick, Acuña, Marlon, Encinales, Carlos, Matranga, Christian B., Pacheco, Nelly, Cure, Carlos, Shukla, Bhavarth, Arteta, Teofilo Ruiz, Amdur, Richard, Cazares, Lisa H., Gregory, Melissa, Ward, Michael D., Porras, Alexandra, Mendoza, Alejandro Rico, Dong, Lian, Kenny, Tara, Brueggemann, Ernie, Downey, Lydia G., Kamalapathy, Priyanka, Lichtenberger, Paola, Falls, Orlando, Simon, Gary L., Bethony, Jeffrey, Firestein, Gary S.
Xuất bản năm Arthritis Rheumatol (2018)

Discovery of Novel Rhabdoviruses in the Blood of Healthy Individuals from West Africa

Bằng Stremlau, Matthew H., Andersen, Kristian G., Folarin, Onikepe A., Grove, Jessica N., Odia, Ikponmwonsa, Ehiane, Philomena E., Omoniwa, Omowunmi, Omoregie, Omigie, Jiang, Pan-Pan, Yozwiak, Nathan L., Matranga, Christian B., Yang, Xiao, Gire, Stephen K., Winnicki, Sarah, Tariyal, Ridhi, Schaffner, Stephen F., Okokhere, Peter O., Okogbenin, Sylvanus, Akpede, George O., Asogun, Danny A., Agbonlahor, Dennis E., Walker, Peter J., Tesh, Robert B., Levin, Joshua Z., Garry, Robert F., Sabeti, Pardis C., Happi, Christian T.
Xuất bản năm PLoS Negl Trop Dis (2015)

Combining genomics and epidemiology to track mumps virus transmission in the United States

Bằng Wohl, Shirlee, Metsky, Hayden C., Schaffner, Stephen F., Piantadosi, Anne, Burns, Meagan, Lewnard, Joseph A., Chak, Bridget, Krasilnikova, Lydia A., Siddle, Katherine J., Matranga, Christian B., Bankamp, Bettina, Hennigan, Scott, Sabina, Brandon, Byrne, Elizabeth H., McNall, Rebecca J., Shah, Rickey R., Qu, James, Park, Daniel J., Gharib, Soheyla, Fitzgerald, Susan, Barreira, Paul, Fleming, Stephen, Lett, Susan, Rota, Paul A., Madoff, Lawrence C., Yozwiak, Nathan L., MacInnis, Bronwyn L., Smole, Sandra, Grad, Yonatan H., Sabeti, Pardis C.
Xuất bản năm PLoS Biol (2020)

Capturing sequence diversity in metagenomes with comprehensive and scalable probe design

Bằng Metsky, Hayden C., Siddle, Katherine J., Gladden-Young, Adrianne, Qu, James, Yang, David K., Brehio, Patrick, Goldfarb, Andrew, Piantadosi, Anne, Wohl, Shirlee, Carter, Amber, Lin, Aaron E., Barnes, Kayla G., Tully, Damien C., Corleis, Bjӧrn, Hennigan, Scott, Barbosa-Lima, Giselle, Vieira, Yasmine R., Paul, Lauren M., Tan, Amanda L., Garcia, Kimberly F., Parham, Leda A., Odia, Ikponmwosa, Eromon, Philomena, Folarin, Onikepe A., Goba, Augustine, Simon-Lorière, Etienne, Hensley, Lisa, Balmaseda, Angel, Harris, Eva, Kwon, Douglas S., Allen, Todd M., Runstadler, Jonathan A., Smole, Sandra, Bozza, Fernando A., Souza, Thiago M. L., Isern, Sharon, Michael, Scott F., Lorenzana, Ivette, Gehrke, Lee, Bosch, Irene, Ebel, Gregory, Grant, Donald S., Happi, Christian T., Park, Daniel J., Gnirke, Andreas, Sabeti, Pardis C., Matranga, Christian B.
Xuất bản năm Nat Biotechnol (2019)

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

Bằng Gire, Stephen K., Goba, Augustine, Andersen, Kristian G., Sealfon, Rachel S. G., Park, Daniel J., Kanneh, Lansana, Jalloh, Simbirie, Momoh, Mambu, Fullah, Mohamed, Dudas, Gytis, Wohl, Shirlee, Moses, Lina M., Yozwiak, Nathan L., Winnicki, Sarah, Matranga, Christian B., Malboeuf, Christine M., Qu, James, Gladden, Adrianne D., Schaffner, Stephen F., Yang, Xiao, Jiang, Pan-Pan, Nekoui, Mahan, Colubri, Andres, Coomber, Moinya Ruth, Fonnie, Mbalu, Moigboi, Alex, Gbakie, Michael, Kamara, Fatima K., Tucker, Veronica, Konuwa, Edwin, Saffa, Sidiki, Sellu, Josephine, Jalloh, Abdul Azziz, Kovoma, Alice, Koninga, James, Mustapha, Ibrahim, Kargbo, Kandeh, Foday, Momoh, Yillah, Mohamed, Kanneh, Franklyn, Robert, Willie, Massally, James L. B., Chapman, Sinéad B., Bochicchio, James, Murphy, Cheryl, Nusbaum, Chad, Young, Sarah, Birren, Bruce W., Grant, Donald S., Scheiffelin, John S., Lander, Eric S., Happi, Christian, Gevao, Sahr M., Gnirke, Andreas, Rambaut, Andrew, Garry, Robert F., Khan, S. Humarr, Sabeti, Pardis C.
Xuất bản năm Science (2014)

Clinical sequencing uncovers origins and evolution of Lassa virus

Bằng Andersen, Kristian G., Shapiro, B. Jesse, Matranga, Christian B., Sealfon, Rachel, Lin, Aaron E., Moses, Lina M., Folarin, Onikepe A., Goba, Augustine, Odia, Ikponmwonsa, Ehiane, Philomena E., Momoh, Mambu, England, Eleina M., Winnicki, Sarah, Branco, Luis M., Gire, Stephen K., Phelan, Eric, Tariyal, Ridhi, Tewhey, Ryan, Omoniwa, Omowunmi, Fullah, Mohammed, Fonnie, Richard, Fonnie, Mbalu, Kanneh, Lansana, Jalloh, Simbirie, Gbakie, Michael, Saffa, Sidiki, Karbo, Kandeh, Gladden, Adrianne D., Qu, James, Stremlau, Matthew, Nekoui, Mahan, Finucane, Hilary K., Tabrizi, Shervin, Vitti, Joseph J., Birren, Bruce, Fitzgerald, Michael, McCowan, Caryn, Ireland, Andrea, Berlin, Aaron M., Bochicchio, James, Tazon-Vega, Barbara, Lennon, Niall J., Ryan, Elizabeth M., Bjornson, Zach, Milner, Danny A., Lukens, Amanda K., Broodie, Nisha, Rowland, Megan, Heinrich, Megan, Akdag, Marjan, Schieffelin, John S., Levy, Danielle, Akpan, Henry, Bausch, Daniel G., Rubins, Kathleen, McCormick, Joseph B., Lander, Eric S., Günther, Stephan, Hensley, Lisa, Okogbenin, Sylvanus, Schaffner, Stephen F., Okokhere, Peter O., Khan, S. Humarr, Grant, Donald S., Akpede, George O., Asogun, Danny A., Gnirke, Andreas, Levin, Joshua Z., Happi, Christian T., Garry, Robert F., Sabeti, Pardis C.
Xuất bản năm Cell (2015)

Genomic epidemiology reveals multiple introductions of Zika virus into the United States

Bằng Grubaugh, Nathan D, Ladner, Jason T, Kraemer, Moritz UG, Dudas, Gytis, Tan, Amanda L, Gangavarapu, Karthik, Wiley, Michael R, White, Stephen, Thézé, Julien, Magnani, Diogo M, Prieto, Karla, Reyes, Daniel, Bingham, Andrea, Paul, Lauren M, Robles-Sikisaka, Refugio, Oliveira, Glenn, Pronty, Darryl, Barcellona, Carolyn M, Metsky, Hayden C, Baniecki, Mary Lynn, Barnes, Kayla G, Chak, Bridget, Freije, Catherine A, Gladden-Young, Adrianne, Gnirke, Andreas, Luo, Cynthia, MacInnis, Bronwyn, Matranga, Christian B, Park, Daniel J, Qu, James, Schaffner, Stephen F, Tomkins-Tinch, Christopher, West, Kendra L, Winnicki, Sarah M, Wohl, Shirlee, Yozwiak, Nathan L, Quick, Joshua, Fauver, Joseph R, Khan, Kamran, Brent, Shannon E, Reiner, Robert C, Lichtenberger, Paola N, Ricciardi, Michael, Bailey, Varian K, Watkins, David I, Cone, Marshall R, Kopp, Edgar W, Hogan, Kelly N, Cannons, Andrew C, Jean, Reynald, Monaghan, Andrew J, Garry, Robert F, Loman, Nicholas J, Faria, Nuno R, Porcelli, Mario C, Vasquez, Chalmers, Nagle, Elyse R, Cummings, Derek AT, Stanek, Danielle, Rambaut, Andrew, Sanchez-Lockhart, Mariano, Sabeti, Pardis C, Gillis, Leah D, Michael, Scott F, Bedford, Trevor, Pybus, Oliver G, Isern, Sharon, Palacios, Gustavo, Andersen, Kristian G
Xuất bản năm Nature (2017)

Zika virus evolution and spread in the Americas

Bằng Metsky, Hayden C., Matranga, Christian B., Wohl, Shirlee, Schaffner, Stephen F., Freije, Catherine A., Winnicki, Sarah M., West, Kendra, Qu, James, Baniecki, Mary Lynn, Gladden-Young, Adrianne, Lin, Aaron E., Tomkins-Tinch, Christopher H., Ye, Simon H., Park, Daniel J., Luo, Cynthia Y., Barnes, Kayla G., Shah, Rickey R., Chak, Bridget, Barbosa-Lima, Giselle, Delatorre, Edson, Vieira, Yasmine R., Paul, Lauren M., Tan, Amanda L., Barcellona, Carolyn M., Porcelli, Mario C., Vasquez, Chalmers, Cannons, Andrew C., Cone, Marshall R., Hogan, Kelly N., Kopp, Edgar W., Anzinger, Joshua J., Garcia, Kimberly F., Parham, Leda A., Gélvez Ramírez, Rosa M., Miranda Montoya, Maria C., Rojas, Diana P., Brown, Catherine M., Hennigan, Scott, Sabina, Brandon, Scotland, Sarah, Gangavarapu, Karthik, Grubaugh, Nathan D., Oliveira, Glenn, Robles-Sikisaka, Refugio, Rambaut, Andrew, Gehrke, Lee, Smole, Sandra, Halloran, M. Elizabeth, Villar, Luis, Mattar, Salim, Lorenzana, Ivette, Cerbino-Neto, Jose, Valim, Clarissa, Degrave, Wim, Bozza, Patricia T., Gnirke, Andreas, Andersen, Kristian G., Isern, Sharon, Michael, Scott F., Bozza, Fernando A., Souza, Thiago M. L., Bosch, Irene, Yozwiak, Nathan L., MacInnis, Bronwyn L., Sabeti, Pardis C.
Xuất bản năm Nature (2017)

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone

Bằng Park, Daniel J., Dudas, Gytis, Wohl, Shirlee, Goba, Augustine, Whitmer, Shannon L.M., Andersen, Kristian G., Sealfon, Rachel S., Ladner, Jason T., Kugelman, Jeffrey R., Matranga, Christian B., Winnicki, Sarah M., Qu, James, Gire, Stephen K., Gladden-Young, Adrianne, Jalloh, Simbirie, Nosamiefan, Dolo, Yozwiak, Nathan L., Moses, Lina M., Jiang, Pan-Pan, Lin, Aaron E., Schaffner, Stephen F., Bird, Brian, Towner, Jonathan, Mamoh, Mambu, Gbakie, Michael, Kanneh, Lansana, Kargbo, David, Massally, James L.B., Kamara, Fatima K., Konuwa, Edwin, Sellu, Josephine, Jalloh, Abdul A., Mustapha, Ibrahim, Foday, Momoh, Yillah, Mohamed, Erickson, Bobbie R., Sealy, Tara, Blau, Dianna, Paddock, Christopher, Brault, Aaron, Amman, Brian, Basile, Jane, Bearden, Scott, Belser, Jessica, Bergeron, Eric, Campbell, Shelley, Chakrabarti, Ayan, Dodd, Kimberly, Flint, Mike, Gibbons, Aridth, Goodman, Christin, Klena, John, McMullan, Laura, Morgan, Laura, Russell, Brandy, Salzer, Johanna, Sanchez, Angela, Wang, David, Jungreis, Irwin, Tomkins-Tinch, Christopher, Kislyuk, Andrey, Lin, Michael F., Chapman, Sinead, MacInnis, Bronwyn, Matthews, Ashley, Bochicchio, James, Hensley, Lisa E., Kuhn, Jens H., Nusbaum, Chad, Schieffelin, John S., Birren, Bruce W., Forget, Marc, Nichol, Stuart T., Palacios, Gustavo F., Ndiaye, Daouda, Happi, Christian, Gevao, Sahr M., Vandi, Mohamed A., Kargbo, Brima, Holmes, Edward C., Bedford, Trevor, Gnirke, Andreas, Ströher, Ute, Rambaut, Andrew, Garry, Robert F., Sabeti, Pardis C.
Xuất bản năm Cell (2015)

Virus genomes reveal factors that spread and sustained the Ebola epidemic

Bằng Dudas, Gytis, Carvalho, Luiz Max, Bedford, Trevor, Tatem, Andrew J., Baele, Guy, Faria, Nuno R., Park, Daniel J., Ladner, Jason T., Arias, Armando, Asogun, Danny, Bielejec, Filip, Caddy, Sarah L., Cotten, Matthew, D’Ambrozio, Jonathan, Dellicour, Simon, Di Caro, Antonino, Diclaro, JosephW., Duraffour, Sophie, Elmore, Michael J., Fakoli, Lawrence S., Faye, Ousmane, Gilbert, Merle L., Gevao, Sahr M., Gire, Stephen, Gladden-Young, Adrianne, Gnirke, Andreas, Goba, Augustine, Grant, Donald S., Haagmans, Bart L., Hiscox, Julian A., Jah, Umaru, Kargbo, Brima, Kugelman, Jeffrey R., Liu, Di, Lu, Jia, Malboeuf, Christine M., Mate, Suzanne, Matthews, David A., Matranga, Christian B., Meredith, Luke W., Qu, James, Quick, Joshua, Pas, Suzan D., Phan, My VT, Pollakis, Georgios, Reusken, Chantal B., Sanchez-Lockhart, Mariano, Schaffner, Stephen F., Schieffelin, John S., Sealfon, Rachel S., Simon-Loriere, Etienne, Smits, Saskia L., Stoecker, Kilian, Thorne, Lucy, Tobin, Ekaete Alice, Vandi, Mohamed A., Watson, Simon J., West, Kendra, Whitmer, Shannon, Wiley, Michael R., Winnicki, Sarah M., Wohl, Shirlee, Wölfel, Roman, Yozwiak, Nathan L., Andersen, Kristian G., Blyden, Sylvia O., Bolay, Fatorma, Carroll, MilesW., Dahn, Bernice, Diallo, Boubacar, Formenty, Pierre, Fraser, Christophe, Gao, George F., Garry, Robert F., Goodfellow, Ian, Günther, Stephan, Happi, Christian T., Holmes, Edward C., Kargbo, Brima, Keïta, Sakoba, Kellam, Paul, Koopmans, Marion P. G., Kuhn, Jens H., Loman, Nicholas J., Magassouba, N’Faly, Naidoo, Dhamari, Nichol, Stuart T., Nyenswah, Tolbert, Palacios, Gustavo, Pybus, Oliver G., Sabeti, Pardis C., Sall, Amadou, Ströher, Ute, Wurie, Isatta, Suchard, Marc A., Lemey, Philippe, Rambaut, Andrew
Xuất bản năm Nature (2017)