GeneXplorer: an interactive web application for microarray data visualization and analysis

Por Rees, Christian A, Demeter, Janos, Matese, John C, Botstein, David, Sherlock, Gavin
Publicado em 2004

Phylogenetic Portrait of the Saccharomyces cerevisiae Functional Genome

Por Gibney, Patrick A., Hickman, Mark J., Bradley, Patrick H., Matese, John C., Botstein, David
Publicado em 2013

Comparative Genomic Hybridizations of Entamoeba Strains Reveal Unique Genetic Fingerprints That Correlate with Virulence

Por Shah, Preetam H., MacFarlane, Ryan C., Bhattacharya, Dhruva, Matese, John C., Demeter, Janos, Stroup, Suzanne E., Singh, Upinder
Publicado em 2005

Coordination of Growth Rate, Cell Cycle, Stress Response, and Metabolic Activity in Yeast

Por Brauer, Matthew J., Huttenhower, Curtis, Airoldi, Edoardo M., Rosenstein, Rachel, Matese, John C., Gresham, David, Boer, Viktor M., Troyanskaya, Olga G., Botstein, David
Publicado em 2008

SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data

Por Diehn, Maximilian, Sherlock, Gavin, Binkley, Gail, Jin, Heng, Matese, John C., Hernandez-Boussard, Tina, Rees, Christian A., Cherry, J. Michael, Botstein, David, Brown, Patrick O., Alizadeh, Ash A.
Publicado em 2003

Identification of Genes Periodically Expressed in the Human Cell Cycle and Their Expression in Tumors

Por Whitfield, Michael L., Sherlock, Gavin, Saldanha, Alok J., Murray, John I., Ball, Catherine A., Alexander, Karen E., Matese, John C., Perou, Charles M., Hurt, Myra M., Brown, Patrick O., Botstein, David
Publicado em 2002

The Stanford Microarray Database: implementation of new analysis tools and open source release of software

Por Demeter, Janos, Beauheim, Catherine, Gollub, Jeremy, Hernandez-Boussard, Tina, Jin, Heng, Maier, Donald, Matese, John C., Nitzberg, Michael, Wymore, Farrell, Zachariah, Zachariah K., Brown, Patrick O., Sherlock, Gavin, Ball, Catherine A.
Publicado em 2007

Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data

Por Ball, Catherine A., Jin, Heng, Sherlock, Gavin, Weng, Shuai, Matese, John C., Andrada, Rey, Binkley, Gail, Dolinski, Kara, Dwight, Selina S., Harris, Midori A., Issel-Tarver, Laurie, Schroeder, Mark, Botstein, David, Cherry, J. Michael
Publicado em 2001

The Stanford Microarray Database: data access and quality assessment tools

Por Gollub, Jeremy, Ball, Catherine A., Binkley, Gail, Demeter, Janos, Finkelstein, David B., Hebert, Joan M., Hernandez-Boussard, Tina, Jin, Heng, Kaloper, Miroslava, Matese, John C., Schroeder, Mark, Brown, Patrick O., Botstein, David, Sherlock, Gavin
Publicado em 2003

The Stanford Microarray Database accommodates additional microarray platforms and data formats

Por Ball, Catherine A., Awad, Ihab A. B., Demeter, Janos, Gollub, Jeremy, Hebert, Joan M., Hernandez-Boussard, Tina, Jin, Heng, Matese, John C., Nitzberg, Michael, Wymore, Farrell, Zachariah, Zachariah K., Brown, Patrick O., Sherlock, Gavin
Publicado em 2005

The Stanford Microarray Database

Por Sherlock, Gavin, Hernandez-Boussard, Tina, Kasarskis, Andrew, Binkley, Gail, Matese, John C., Dwight, Selina S., Kaloper, Miroslava, Weng, Shuai, Jin, Heng, Ball, Catherine A., Eisen, Michael B., Spellman, Paul T., Brown, Patrick O., Botstein, David, Cherry, J. Michael
Publicado em 2001

Microarray Data Standards: An Open Letter

Por Ball, Catherine, Brazma, Alvis, Causton, Helen, Chervitz, Steve, Edgar, Ron, Hingamp, Pascal, Matese, John C., Parkinson, Helen, Quackenbush, John, Ringwald, Martin, Sansone, Susanna-Assunta, Sherlock, Gavin, Spellman, Paul, Stoeckert, Christian, Tateno, Yoshio, Taylor, Ronald, White, Joseph, Winegarden, Neil
Publicado em 2004

Submission of Microarray Data to Public Repositories

Por Ball, Catherine A, Brazma, Alvis, Causton, Helen, Chervitz, Steve, Edgar, Ron, Hingamp, Pascal, Matese, John C, Parkinson, Helen, Quackenbush, John, Ringwald, Martin, Sansone, Susanna-Assunta, Sherlock, Gavin, Spellman, Paul, Stoeckert, Chris, Tateno, Yoshio, Taylor, Ronald, White, Joseph, Winegarden, Neil
Publicado em 2004

Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications

Por Sørlie, Therese, Perou, Charles M., Tibshirani, Robert, Aas, Turid, Geisler, Stephanie, Johnsen, Hilde, Hastie, Trevor, Eisen, Michael B., van de Rijn, Matt, Jeffrey, Stefanie S., Thorsen, Thor, Quist, Hanne, Matese, John C., Brown, Patrick O., Botstein, David, Lønning, Per Eystein, Børresen-Dale, Anne-Lise
Publicado em 2001

Gene Ontology: tool for the unification of biology

Por Ashburner, Michael, Ball, Catherine A., Blake, Judith A., Botstein, David, Butler, Heather, Cherry, J. Michael, Davis, Allan P., Dolinski, Kara, Dwight, Selina S., Eppig, Janan T., Harris, Midori A., Hill, David P., Issel-Tarver, Laurie, Kasarskis, Andrew, Lewis, Suzanna, Matese, John C., Richardson, Joel E., Ringwald, Martin, Rubin, Gerald M., Sherlock, Gavin
Publicado em 2000

The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome with 16,000 Tiny Chromosomes

Por Swart, Estienne C., Bracht, John R., Magrini, Vincent, Minx, Patrick, Chen, Xiao, Zhou, Yi, Khurana, Jaspreet S., Goldman, Aaron D., Nowacki, Mariusz, Schotanus, Klaas, Jung, Seolkyoung, Fulton, Robert S., Ly, Amy, McGrath, Sean, Haub, Kevin, Wiggins, Jessica L., Storton, Donna, Matese, John C., Parsons, Lance, Chang, Wei-Jen, Bowen, Michael S., Stover, Nicholas A., Jones, Thomas A., Eddy, Sean R., Herrick, Glenn A., Doak, Thomas G., Wilson, Richard K., Mardis, Elaine R., Landweber, Laura F.
Publicado em 2013