Xwalk: computing and visualizing distances in cross-linking experiments

Por Kahraman, Abdullah, Malmström, Lars, Aebersold, Ruedi
Publicado em 2011

A Computational Tool to Detect and Avoid Redundancy in Selected Reaction Monitoring

Por Röst, Hannes, Malmström, Lars, Aebersold, Ruedi
Publicado em 2012

The Yeast Resource Center Public Data Repository

Por Riffle, Michael, Malmström, Lars, Davis, Trisha N.
Publicado em 2005

Reproducible quantitative proteotype data matrices for systems biology

Por Röst, Hannes L., Malmström, Lars, Aebersold, Ruedi
Publicado no Mol Biol Cell (2015)

Proteome-wide selected reaction monitoring assays for the human pathogen Streptococcus pyogenes

Por Karlsson, Christofer, Malmström, Lars, Aebersold, Ruedi, Malmström, Johan
Publicado em 2012

Fast and Efficient XML Data Access for Next-Generation Mass Spectrometry

Por Röst, Hannes L., Schmitt, Uwe, Aebersold, Ruedi, Malmström, Lars
Publicado no PLoS One (2015)

aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data

Por Rosenberger, George, Ludwig, Christina, Röst, Hannes L., Aebersold, Ruedi, Malmström, Lars
Publicado em 2014

2DDB – a bioinformatics solution for analysis of quantitative proteomics data

Por Malmström, Lars, Marko-Varga, György, Westergren-Thorsson, Gunilla, Laurell, Thomas, Malmström, Johan
Publicado em 2006

Cross-Link Guided Molecular Modeling with ROSETTA

Por Kahraman, Abdullah, Herzog, Franz, Leitner, Alexander, Rosenberger, George, Aebersold, Ruedi, Malmström, Lars
Publicado em 2013

Targeted Proteomics and Absolute Protein Quantification for the Construction of a Stoichiometric Host-Pathogen Surface Density Model

Por Sjöholm, Kristoffer, Kilsgård, Ola, Teleman, Johan, Happonen, Lotta, Malmström, Lars, Malmström, Johan
Publicado no Mol Cell Proteomics (2017)

Large-scale inference of protein tissue origin in gram-positive sepsis plasma using quantitative targeted proteomics

Por Malmström, Erik, Kilsgård, Ola, Hauri, Simon, Smeds, Emanuel, Herwald, Heiko, Malmström, Lars, Malmström, Johan
Publicado no Nat Commun (2016)

Superfamily Assignments for the Yeast Proteome through Integration of Structure Prediction with the Gene Ontology

Por Malmström, Lars, Riffle, Michael, Strauss, Charlie E. M, Chivian, Dylan, Davis, Trisha N, Bonneau, Richard, Baker, David
Publicado em 2007

xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry

Por Walzthoeni, Thomas, Joachimiak, Lukasz A, Rosenberger, George, Röst, Hannes L, Malmström, Lars, Leitner, Alexander, Frydman, Judith, Aebersold, Ruedi
Publicado no Nat Methods (2015)

Streptococcus pyogenes in Human Plasma: ADAPTIVE MECHANISMS ANALYZED BY MASS SPECTROMETRY-BASED PROTEOMICS

Por Malmström, Johan, Karlsson, Christofer, Nordenfelt, Pontus, Ossola, Reto, Weisser, Hendrik, Quandt, Andreas, Hansson, Karin, Aebersold, Ruedi, Malmström, Lars, Björck, Lars
Publicado em 2012

Splicosomal and serine and arginine-rich splicing factors as targets for TGF-β

Por Hallgren, Oskar, Malmström, Johan, Malmström, Lars, Andersson-Sjöland, Annika, Wildt, Marie, Tufvesson, Ellen, Juhasz, Peter, Marko-Varga, György, Westergren-Thorsson, Gunilla
Publicado em 2012

Identification of secreted glycoproteins of human prostate and bladder stromal cells by comparative quantitative proteomics

Por Goo, Young Ah, Liu, Alvin Y., Ryu, Soyoung, Shaffer, Scott A., Malmström, Lars, Page, Laura, Nguyen, Liem T., Doneanu, Catalin E., Goodlett, David R.
Publicado no Prostate (2009)

Deciphering the mode of action of the processive polysaccharide modifying enzyme dermatan sulfate epimerase 1 by hydrogen–deuterium exchange mass spectrometry

Por Tykesson, Emil, Mao, Yang, Maccarana, Marco, Pu, Yi, Gao, Jinshan, Lin, Cheng, Zaia, Joseph, Westergren-Thorsson, Gunilla, Ellervik, Ulf, Malmström, Lars, Malmström, Anders
Publicado no Chem Sci (2016)

Identification of a Set of Conserved Eukaryotic Internal Retention Time Standards for Data-independent Acquisition Mass Spectrometry

Por Parker, Sarah J., Rost, Hannes, Rosenberger, George, Collins, Ben C., Malmström, Lars, Amodei, Dario, Venkatraman, Vidya, Raedschelders, Koen, Van Eyk, Jennifer E., Aebersold, Ruedi
Publicado no Mol Cell Proteomics (2015)

TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics

Por Röst, Hannes L., Liu, Yansheng, D’Agostino, Giuseppe, Zanella, Matteo, Navarro, Pedro, Rosenberger, George, Collins, Ben C., Gillet, Ludovic, Testa, Giuseppe, Malmström, Lars, Aebersold, Ruedi
Publicado no Nat Methods (2016)

Deciphering diatom biochemical pathways via whole-cell proteomics

Por Nunn, Brook L., Aker, Jocelyn R., Shaffer, Scott A., Tsai, Shannon, Strzepek, Robert F., Boyd, Philip W., Freeman, Theodore Larson, Brittnacher, Mitchell, Malmström, Lars, Goodlett, David R.
Publicado em 2009