Inventing an arsenal: adaptive evolution and neofunctionalization of snake venom phospholipase A(2 )genes

by Lynch, Vincent J
Published 2007

Use with caution: Developmental systems divergence and potential pitfalls of animal models

by Lynch, Vincent J.
Published 2009

Relaxed constraint and functional divergence of the progesterone receptor (PGR) in the human stem-lineage

by Marinić, Mirna, Lynch, Vincent J.
Published in PLoS Genet (2020)

Multiple Chromosomal Rearrangements Structured the Ancestral Vertebrate Hox-Bearing Protochromosomes

by Lynch, Vincent J., Wagner, Günter P.
Published 2009

An Ancient Fecundability-Associated Polymorphism Switches a Repressor into an Enhancer of Endometrial TAP2 Expression

by Mika, Katelyn M., Lynch, Vincent J.
Published in Am J Hum Genet (2016)

Pervasive duplication of tumor suppressors in Afrotherians during the evolution of large bodies and reduced cancer risk

by Vazquez, Juan M, Lynch, Vincent J
Published in eLife (2021)

Adaptive evolution of Hox-gene homeodomains after cluster duplications

by Lynch, Vincent J, Roth, Jutta J, Wagner, Günter P
Published 2006

Evolution of a derived protein–protein interaction between HoxA11 and Foxo1a in mammals caused by changes in intramolecular regulation

by Brayer, Kathryn J., Lynch, Vincent J., Wagner, Günter P.
Published 2011

Evolutionary transcriptomics implicates HAND2 in the origins of implantation and regulation of gestation length

by Marinić, Mirna, Mika, Katelyn, Chigurupati, Sravanthi, Lynch, Vincent J
Published in eLife (2021)

HoxA-11 and FOXO1A Cooperate to Regulate Decidual Prolactin Expression: Towards Inferring the Core Transcriptional Regulators of Decidual Genes

by Lynch, Vincent J., Brayer, Kathryn, Gellersen, Birgit, Wagner, Günter P.
Published 2009

Evolutionary forward genomics reveals novel insights into the genes and pathways dysregulated in recurrent early pregnancy loss

by Kosova, Gülüm, Stephenson, Mary D., Lynch, Vincent J., Ober, Carole
Published in Hum Reprod (2015)

An Ancient Fecundability-Associated Polymorphism Creates a GATA2 Binding Site in a Distal Enhancer of HLA-F

by Mika, Katelyn M., Li, Xilong, DeMayo, Francesco J., Lynch, Vincent J.
Published in Am J Hum Genet (2018)

Adaptive changes in the transcription factor HoxA-11 are essential for the evolution of pregnancy in mammals

by Lynch, Vincent J., Tanzer, Andrea, Wang, Yajun, Leung, Frederick C., Gellersen, Birgit, Emera, Deena, Wagner, Gunter P.
Published 2008

Measuring Transcription Factor–Binding Site Turnover: A Maximum Likelihood Approach Using Phylogenies

by Otto, Wolfgang, Stadler, Peter F., López-Giraldéz, Francesc, Townsend, Jeffrey P., Lynch, Vincent J., Wagner, Günter P.
Published 2009

Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs

by Kapusta, Aurélie, Kronenberg, Zev, Lynch, Vincent J., Zhuo, Xiaoyu, Ramsay, LeeAnn, Bourque, Guillaume, Yandell, Mark, Feschotte, Cédric
Published 2013

TP53 copy number expansion is associated with the evolution of increased body size and an enhanced DNA damage response in elephants

by Sulak, Michael, Fong, Lindsey, Mika, Katelyn, Chigurupati, Sravanthi, Yon, Lisa, Mongan, Nigel P, Emes, Richard D, Lynch, Vincent J
Published in eLife (2016)

Correction: TP53 copy number expansion is associated with the evolution of increased body size and an enhanced DNA damage response in elephants

by Sulak, Michael, Fong, Lindsey, Mika, Katelyn, Chigurupati, Sravanthi, Yon, Lisa, Mongan, Nigel P, Emes, Richard D, Lynch, Vincent J
Published in eLife (2016)

Adaptive evolution of HoxA-11 and HoxA-13 at the origin of the uterus in mammals.

by Lynch, Vincent J., Roth, Jutta J., Takahashi, Kazuhiko, Dunn, Casey W., Nonaka, Daisuke F., Stopper, Geffrey F., Wagner, Günter P.
Published 2004

Functional Architecture of Deleterious Genetic Variants in the Genome of a Wrangel Island Mammoth

by Fry, Erin, Kim, Sun K, Chigurapti, Sravanthi, Mika, Katelyn M, Ratan, Aakrosh, Dammermann, Alexander, Mitchell, Brian J, Miller, Webb, Lynch, Vincent J
Published in Genome Biol Evol (2020)

Transposable elements are the primary source of novelty in primate gene regulation

by Trizzino, Marco, Park, YoSon, Holsbach-Beltrame, Marcia, Aracena, Katherine, Mika, Katelyn, Caliskan, Minal, Perry, George H., Lynch, Vincent J., Brown, Christopher D.
Published in Genome Res (2017)