Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes

par Lu, Zefu, Hofmeister, Brigitte T., Vollmers, Christopher, DuBois, Rebecca M., Schmitz, Robert J.
Publié dans Nucleic Acids Res (2017)

Evolution of Conserved Noncoding Sequences in Arabidopsis thaliana

par Yocca, Alan E., Lu, Zefu, Schmitz, Robert J., Freeling, Michael, Edger, Patrick P.
Publié dans Mol Biol Evol (2021)

Glabrous Rice 1, encoding a homeodomain protein, regulates trichome development in rice

par Li, Jinjun, Yuan, Yundong, Lu, Zefu, Yang, Liusha, Gao, Rongcun, Lu, Jingen, Li, Jiayang, Xiong, Guosheng
Publié dans Rice (N Y) (2012)

Chromatin accessibility profiling in Neurospora crassa reveals molecular features associated with accessible and inaccessible chromatin

par Ferraro, Aileen R., Ameri, Abigail J., Lu, Zefu, Kamei, Masayuki, Schmitz, Robert J., Lewis, Zachary A.
Publié dans BMC Genomics (2021)

Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes

par Crisp, Peter A., Marand, Alexandre P., Noshay, Jaclyn M., Zhou, Peng, Lu, Zefu, Schmitz, Robert J., Springer, Nathan M.
Publié dans Proc Natl Acad Sci U S A (2020)

Tissue-Specific Ubiquitination by IPA1 INTERACTING PROTEIN1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice

par Wang, Jing, Yu, Hong, Xiong, Guosheng, Lu, Zefu, Jiao, Yongqing, Meng, Xiangbing, Liu, Guifu, Chen, Xuewei, Wang, Yonghong, Li, Jiayang
Publié dans Plant Cell (2017)

The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family

par Galli, Mary, Khakhar, Arjun, Lu, Zefu, Chen, Zongliang, Sen, Sidharth, Joshi, Trupti, Nemhauser, Jennifer L., Schmitz, Robert J., Gallavotti, Andrea
Publié dans Nat Commun (2018)

Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation

par Wang, Lei, Wang, Bing, Jiang, Liang, Liu, Xue, Li, Xilong, Lu, Zefu, Meng, Xiangbing, Wang, Yonghong, Smith, Steven M., Li, Jiayang
Publié dans Plant Cell (2015)

A Qualitative Change in the Transcriptome Occurs after the First Cell Cycle and Coincides with Lumen Establishment during MDCKII Cystogenesis

par Wang, Tianfang, Kwon, Sang-Ho, Peng, Xiao, Urdy, Severine, Lu, Zefu, Schmitz, Robert J., Dalton, Stephen, Mostov, Keith E., Zhao, Shaying
Publié dans iScience (2020)

Photoperiod-responsive changes in chromatin accessibility in phloem companion and epidermis cells of Arabidopsis leaves

par Tian, Hao, Li, Yuru, Wang, Ce, Xu, Xingwen, Zhang, Yajie, Zeb, Qudsia, Zicola, Johan, Fu, Yongfu, Turck, Franziska, Li, Legong, Lu, Zefu, Liu, Liangyu
Publié dans Plant Cell (2021)

Genome-Wide Binding Analysis of the Transcription Activator IDEAL PLANT ARCHITECTURE1 Reveals a Complex Network Regulating Rice Plant Architecture([W])

par Lu, Zefu, Yu, Hong, Xiong, Guosheng, Wang, Jing, Jiao, Yongqing, Liu, Guifu, Jing, Yanhui, Meng, Xiangbing, Hu, Xingming, Qian, Qian, Fu, Xiangdong, Wang, Yonghong, Li, Jiayang
Publié 2013

Monitoring the interplay between transposable element families and DNA methylation in maize

par Noshay, Jaclyn M., Anderson, Sarah N., Zhou, Peng, Ji, Lexiang, Ricci, William, Lu, Zefu, Stitzer, Michelle C., Crisp, Peter A., Hirsch, Candice N., Zhang, Xiaoyu, Schmitz, Robert J., Springer, Nathan M.
Publié dans PLoS Genet (2019)

The Gossypium longicalyx Genome as a Resource for Cotton Breeding and Evolution

par Grover, Corrinne E., Pan, Mengqiao, Yuan, Daojun, Arick, Mark A., Hu, Guanjing, Brase, Logan, Stelly, David M., Lu, Zefu, Schmitz, Robert J., Peterson, Daniel G., Wendel, Jonathan F., Udall, Joshua A.
Publié dans G3 (Bethesda) (2020)

IPA1 functions as a downstream transcription factor repressed by D53 in strigolactone signaling in rice

par Song, Xiaoguang, Lu, Zefu, Yu, Hong, Shao, Gaoneng, Xiong, Jinsong, Meng, Xiangbing, Jing, Yanhui, Liu, Guifu, Xiong, Guosheng, Duan, Jingbo, Yao, Xue-Feng, Liu, Chun-Ming, Li, Hongqing, Wang, Yonghong, Li, Jiayang
Publié dans Cell Res (2017)

On the origin and evolutionary consequences of gene body DNA methylation

par Bewick, Adam J., Ji, Lexiang, Niederhuth, Chad E., Willing, Eva-Maria, Hofmeister, Brigitte T., Shi, Xiuling, Wang, Li, Lu, Zefu, Rohr, Nicholas A., Hartwig, Benjamin, Kiefer, Christiane, Deal, Roger B., Schmutz, Jeremy, Grimwood, Jane, Stroud, Hume, Jacobsen, Steven E., Schneeberger, Korbinian, Zhang, Xiaoyu, Schmitz, Robert J.
Publié dans Proc Natl Acad Sci U S A (2016)

Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery

par Xu, Xiaosa, Crow, Megan, Rice, Brian R., Li, Forrest, Harris, Benjamin, Liu, Lei, Demesa-Arevalo, Edgar, Lu, Zefu, Wang, Liya, Fox, Nathan, Wang, Xiaofei, Drenkow, Jorg, Luo, Anding, Char, Si Nian, Yang, Bing, Sylvester, Anne W., Gingeras, Thomas, Schmitz, Robert J., Ware, Doreen, Lipka, Alexander E., Gillis, Jesse, Jackson, David
Publié dans Dev Cell (2021)

Widespread Long-range Cis-Regulatory Elements in the Maize Genome

par Ricci, William A., Lu, Zefu, Ji, Lexiang, Marand, Alexandre P., Ethridge, Christina L., Murphy, Nathalie G., Noshay, Jaclyn M., Galli, Mary, Mejía-Guerra, María Katherine, Colomé-Tatché, Maria, Johannes, Frank, Rowley, M. Jordan, Corces, Victor G., Zhai, Jixian, Scanlon, Michael J., Buckler, Edward S., Gallavotti, Andrea, Springer, Nathan M., Schmitz, Robert J., Zhang, Xiaoyu
Publié dans Nat Plants (2019)