Rapid evaluation and quality control of next generation sequencing data with FaQCs

Por Lo, Chien-Chi, Chain, Patrick S G
Publicado no BMC Bioinformatics (2014)

Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs

Por Scholz, Matthew, Lo, Chien-Chi, Chain, Patrick S. G.
Publicado em 2014

Recruiting Human Microbiome Shotgun Data to Site-Specific Reference Genomes

Por Xie, Gary, Lo, Chien-Chi, Scholz, Matthew, Chain, Patrick S. G.
Publicado em 2014

The AlternativeTranslational Profile That Underlies the Immune-Evasive State of Persistence in Chlamydiaceae Exploits Differential Tryptophan Contents of the Protein Repertoire

Por Lo, Chien-Chi, Xie, Gary, Bonner, Carol A., Jensen, Roy A.
Publicado em 2012

ADEPT, a dynamic next generation sequencing data error-detection program with trimming

Por Feng, Shihai, Lo, Chien-Chi, Li, Po-E, Chain, Patrick S. G.
Publicado no BMC Bioinformatics (2016)

Cohesion Group Approach for Evolutionary Analysis of Aspartokinase, an Enzyme That Feeds a Branched Network of Many Biochemical Pathways

Por Lo, Chien-Chi, Bonner, Carol A., Xie, Gary, D'Souza, Mark, Jensen, Roy A.
Publicado em 2009

CRP-Mediated Carbon Catabolite Regulation of Yersinia pestis Biofilm Formation Is Enhanced by the Carbon Storage Regulator Protein, CsrA

Por Willias, Stephan P., Chauhan, Sadhana, Lo, Chien-Chi, Chain, Patrick S. G., Motin, Vladimir L.
Publicado no PLoS One (2015)

Under-detection of endospore-forming Firmicutes in metagenomic data

Por Filippidou, Sevasti, Junier, Thomas, Wunderlin, Tina, Lo, Chien-Chi, Li, Po-E, Chain, Patrick S., Junier, Pilar
Publicado no Comput Struct Biotechnol J (2015)

First Complete Genome Sequence of Felis catus Gammaherpesvirus 1

Por Troyer, Ryan M., Lee, Justin S., Vuyisich, Momchilo, Chain, Patrick, Lo, Chien-Chi, Kronmiller, Brent, Bracha, Shay, Avery, Anne C., VandeWoude, Sue
Publicado no Genome Announc (2015)

Adaptation Genomics of a Small-Colony Variant in a Pseudomonas chlororaphis 30-84 Biofilm

Por Wang, Dongping, Dorosky, Robert J., Han, Cliff S., Lo, Chien-chi, Dichosa, Armand E. K., Chain, Patrick S., Yu, Jun Myoung, Pierson, Leland S., Pierson, Elizabeth A.
Publicado no Appl Environ Microbiol (2015)

Biostimulation and microbial community profiling reveal insights on RDX transformation in groundwater

Por Wang, Dongping, Boukhalfa, Hakim, Marina, Oana, Ware, Doug S., Goering, Tim J., Sun, Fengjie, Daligault, Hajnalka E., Lo, Chien‐Chi, Vuyisich, Momchilo, Starkenburg, Shawn R.
Publicado no Microbiologyopen (2016)

A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities

Por Leung, Kaston, Zahn, Hans, Leaver, Timothy, Konwar, Kishori M., Hanson, Niels W., Pagé, Antoine P., Lo, Chien-Chi, Chain, Patrick S., Hallam, Steven J., Hansen, Carl L.
Publicado em 2012

Genome Sequence of Bacillus alveayuensis Strain 24KAM51, a Halotolerant Thermophile Isolated from a Hydrothermal Vent

Por Filippidou, Sevasti, Wunderlin, Tina, Junier, Thomas, Jeanneret, Nicole, Johnson, Shannon, McMurry, Kim, Gleasner, Cheryl D., Lo, Chien-Chi, Li, Po-E, Vuyisich, Momchilo, Chain, Patrick S., Junier, Pilar
Publicado no Genome Announc (2015)

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

Por Li, Po-E, Lo, Chien-Chi, Anderson, Joseph J., Davenport, Karen W., Bishop-Lilly, Kimberly A., Xu, Yan, Ahmed, Sanaa, Feng, Shihai, Mokashi, Vishwesh P., Chain, Patrick S.G.
Publicado no Nucleic Acids Res (2017)

Saliva microbiomes distinguish caries-active from healthy human populations

Por Yang, Fang, Zeng, Xiaowei, Ning, Kang, Liu, Kuan-Liang, Lo, Chien-Chi, Wang, Wei, Chen, Jie, Wang, Dongmei, Huang, Ranran, Chang, Xingzhi, Chain, Patrick S, Xie, Gary, Ling, Junqi, Xu, Jian
Publicado em 2012

Genome Sequences of Two Klebsiella pneumoniae Isolates from Different Geographical Regions, Argentina (Strain JHCK1) and the United States (Strain VA360)

Por Xie, Gary, Ramirez, Maria S., Marshall, Steven H., Hujer, Kristine M., Lo, Chien-Chi, Johnson, Shannon, Li, Po-E, Davenport, Karen, Endimiani, Andrea, Bonomo, Robert A., Tolmasky, Marcelo E., Chain, Patrick S. G.
Publicado em 2013

Genome Sequence of Aeribacillus pallidus Strain GS3372, an Endospore-Forming Bacterium Isolated in a Deep Geothermal Reservoir

Por Filippidou, Sevasti, Jaussi, Marion, Junier, Thomas, Wunderlin, Tina, Jeanneret, Nicole, Regenspurg, Simona, Li, Po-E, Lo, Chien-Chi, Johnson, Shannon, McMurry, Kim, Gleasner, Cheryl D., Vuyisich, Momchilo, Chain, Patrick S., Junier, Pilar
Publicado no Genome Announc (2015)

Artificial Polyploidy Improves Bacterial Single Cell Genome Recovery

Por Dichosa, Armand E. K., Fitzsimons, Michael S., Lo, Chien-Chi, Weston, Lea L., Preteska, Lara G., Snook, Jeremy P., Zhang, Xiaojing, Gu, Wei, McMurry, Kim, Green, Lance D., Chain, Patrick S., Detter, J. Chris, Han, Cliff S.
Publicado em 2012

Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage

Por Dodsworth, Jeremy A., Blainey, Paul C., Murugapiran, Senthil K., Swingley, Wesley D., Ross, Christian A., Tringe, Susannah G., Chain, Patrick S. G., Scholz, Matthew B., Lo, Chien-Chi, Raymond, Jason, Quake, Stephen R., Hedlund, Brian P.
Publicado em 2013

Quantitative Deep Sequencing Reveals Dynamic HIV-1 Escape and Large Population Shifts during CCR5 Antagonist Therapy In Vivo

Por Tsibris, Athe M. N., Korber, Bette, Arnaout, Ramy, Russ, Carsten, Lo, Chien-Chi, Leitner, Thomas, Gaschen, Brian, Theiler, James, Paredes, Roger, Su, Zhaohui, Hughes, Michael D., Gulick, Roy M., Greaves, Wayne, Coakley, Eoin, Flexner, Charles, Nusbaum, Chad, Kuritzkes, Daniel R.
Publicado em 2009