REPURPOSING GERMLINE EXOMES OF THE CANCER GENOME ATLAS DEMANDS A CAUTIOUS APPROACH AND SAMPLE-SPECIFIC VARIANT FILTERING

Por KOIRE, AMANDA, KATSONIS, PANAGIOTIS, LICHTARGE, OLIVIER
Publicado no Pac Symp Biocomput (2016)

Fusion of the subunits α and β of succinyl-CoA synthetase as a phylogenetic marker for Pezizomycotina fungi

Por Koire, Amanda M., Cavalcanti, Andre R.O.
Publicado em 2011

Repurposed Transcriptomic Data Reveal Small Viral RNA Produced by Influenza Virus during Infection in Mice

Por Koire, Amanda, Gilbert, Brian E., Sucgang, Richard, Zechiedrich, Lynn
Publicado no PLoS One (2016)

Correction: Repurposed Transcriptomic Data Reveal Small Viral RNA Produced by Influenza Virus during Infection in Mice

Por Koire, Amanda, Gilbert, Brian E., Sucgang, Richard, Zechiedrich, Lynn
Publicado no PLoS One (2017)

Detection of Fused Genes in Eukaryotic Genomes using Gene deFuser: Analysis of the Tetrahymena thermophila genome

Por Salim, Hannah MW, Koire, Amanda M, Stover, Nicholas A, Cavalcanti, Andre RO
Publicado em 2011

Codon-level co-occurrences of germline variants and somatic mutations in cancer are rare but often lead to incorrect variant annotation and underestimated impact prediction

Por Koire, Amanda, Kim, Young Won, Wang, Jarey, Katsonis, Panagiotis, Jin, Haijing, Lichtarge, Olivier
Publicado no PLoS One (2017)

Predicting phenotype from genotype: Improving accuracy through more robust experimental and computational modeling

Por Gallion, Jonathan, Koire, Amanda, Katsonis, Panagiotis, Schoenegge, Anne‐Marie, Bouvier, Michel, Lichtarge, Olivier
Publicado no Hum Mutat (2017)

Single nucleotide variations: Biological impact and theoretical interpretation

Por Katsonis, Panagiotis, Koire, Amanda, Wilson, Stephen Joseph, Hsu, Teng-Kuei, Lua, Rhonald C, Wilkins, Angela Dawn, Lichtarge, Olivier
Publicado no Protein Sci (2014)