Role of Glycosaminoglycans in Procathepsin B Maturation: Molecular Mechanism Elucidated by a Computational Study

door Bojarski, Krzysztof K., Karczyńska, Agnieszka S., Samsonov, Sergey A.
Gepubliceerd in J Chem Inf Model (2020)

UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics

door Czaplewski, Cezary, Karczyńska, Agnieszka, Sieradzan, Adam K, Liwo, Adam
Gepubliceerd in Nucleic Acids Res (2018)

A structural model of the immune checkpoint CD160–HVEM complex derived from HDX-mass spectrometry and molecular modeling

door Kuncewicz, Katarzyna, Spodzieja, Marta, Sieradzan, Adam, Karczyńska, Agnieszka, Dąbrowska, Katarzyna, Dadlez, Michał, Speiser, Daniel E., Derre, Laurent, Rodziewicz-Motowidło, Sylwia
Gepubliceerd in Oncotarget (2019)

Fragments of gD Protein as Inhibitors of BTLA/HVEM Complex Formation - Design, Synthesis, and Cellular Studies

door Kuncewicz, Katarzyna, Battin, Claire, Sieradzan, Adam, Karczyńska, Agnieszka, Orlikowska, Marta, Wardowska, Anna, Pikuła, Michał, Steinberger, Peter, Rodziewicz-Motowidło, Sylwia, Spodzieja, Marta
Gepubliceerd in Int J Mol Sci (2020)

Disulfide-Linked Peptides for Blocking BTLA/HVEM Binding

door Spodzieja, Marta, Kuncewicz, Katarzyna, Sieradzan, Adam, Karczyńska, Agnieszka, Iwaszkiewicz, Justyna, Cesson, Valérie, Węgrzyn, Katarzyna, Zhukov, Igor, Maszota-Zieleniak, Martyna, Michielin, Olivier, Speiser, Daniel E., Zoete, Vincent, Derré, Laurent, Rodziewicz-Motowidło, Sylwia
Gepubliceerd in Int J Mol Sci (2020)

Performance of protein-structure predictions with the physics-based UNRES force field in CASP11

door Krupa, Paweł, Mozolewska, Magdalena A., Wiśniewska, Marta, Yin, Yanping, He, Yi, Sieradzan, Adam K., Ganzynkowicz, Robert, Lipska, Agnieszka G., Karczyńska, Agnieszka, Ślusarz, Magdalena, Ślusarz, Rafał, Giełdoń, Artur, Czaplewski, Cezary, Jagieła, Dawid, Zaborowski, Bartłomiej, Scheraga, Harold A., Liwo, Adam
Gepubliceerd in Bioinformatics (2016)

Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13

door Karczyńska, Agnieszka S., Ziȩba, Karolina, Uciechowska, Urszula, Mozolewska, Magdalena A., Krupa, Paweł, Lubecka, Emilia A., Lipska, Agnieszka G., Sikorska, Celina, Samsonov, Sergey A., Sieradzan, Adam K., Giełdoń, Artur, Liwo, Adam, Ślusarz, Rafał, Ślusarz, Magdalena, Lee, Jooyoung, Joo, Keehyoung, Czaplewski, Cezary
Gepubliceerd in J Chem Inf Model (2020)

Assessment of chemical-crosslink-assisted protein structure modeling in CASP13

door Fajardo, J. Eduardo, Shrestha, Rojan, Gil, Nelson, Belsom, Adam, Crivelli, Silvia N., Czaplewski, Cezary, Fidelis, Krzysztof, Grudinin, Sergei, Karasikov, Mikhail, Karczyńska, Agnieszka S., Kryshtafovych, Andriy, Leitner, Alexander, Liwo, Adam, Lubecka, Emilia A., Monastyrskyy, Bohdan, Pagès, Guillaume, Rappsilber, Juri, Sieradzan, Adam K., Sikorska, Celina, Trabjerg, Esben, Fiser, Andras
Gepubliceerd in Proteins (2019)

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

door Lensink, Marc F., Brysbaert, Guillaume, Nadzirin, Nurul, Velankar, Sameer, Chaleil, Raphaël A. G., Gerguri, Tereza, Bates, Paul A., Laine, Elodie, Carbone, Alessandra, Grudinin, Sergei, Kong, Ren, Liu, Ran-Ran, Xu, Xi-Ming, Shi, Hang, Chang, Shan, Eisenstein, Miriam, Karczynska, Agnieszka, Czaplewski, Cezary, Lubecka, Emilia, Lipska, Agnieszka, Krupa, Paweł, Mozolewska, Magdalena, Golon, Łukasz, Samsonov, Sergey, Liwo, Adam, Crivelli, Silvia, Pagès, Guillaume, Karasikov, Mikhail, Kadukova, Maria, Yan, Yumeng, Huang, Sheng-You, Rosell, Mireia, Rodríguez-Lumbreras, Luis A., Romero-Durana, Miguel, Díaz-Bueno, Lucía, Fernandez-Recio, Juan, Christoffer, Charles, Terashi, Genki, Shin, Woong-Hee, Aderinwale, Tunde, Subraman, Sai Raghavendra Maddhuri Venkata, Kihara, Daisuke, Kozakov, Dima, Vajda, Sandor, Porter, Kathryn, Padhorny, Dzmitry, Desta, Israel, Beglov, Dmitri, Ignatov, Mikhail, Kotelnikov, Sergey, Moal, Iain H., Ritchie, David W., de Beauchêne, Isaure Chauvot, Maigret, Bernard, Devignes, Marie-Dominique, Echartea, Maria E. Ruiz, Barradas-Bautista, Didier, Cao, Zhen, Cavallo, Luigi, Oliva, Romina, Cao, Yue, Shen, Yang, Baek, Minkyung, Park, Taeyong, Woo, Hyeonuk, Seok, Chaok, Braitbard, Merav, Bitton, Lirane, Scheidman-Duhovny, Dina, Dapkūnas, Justas, Olechnovič, Kliment, Venclovas, Česlovas, Kundrotas, Petras J., Belkin, Saveliy, Chakravarty, Devlina, Badal, Varsha D., Vakser, Ilya A., Vreven, Thom, Vangaveti, Sweta, Borrman, Tyler, Weng, Zhiping, Guest, Johnathan D., Gowthaman, Ragul, Pierce, Brian G., Xu, Xianjin, Duan, Rui, Qiu, Liming, Hou, Jie, Merideth, Benjamin Ryan, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Koukos, Panagiotis I., Roel-Touris, Jorge, Ambrosetti, Francesco, Geng, Cunliang, Schaarschmidt, Jörg, Trellet, Mikael E., Melquiond, Adrien S. J., Xue, Li, Jiménez-García, Brian, van Noort, Charlotte W., Honorato, Rodrigo V., Bonvin, Alexandre M. J. J., Wodak, Shoshana J.
Gepubliceerd in Proteins (2019)