Role of Glycosaminoglycans in Procathepsin B Maturation: Molecular Mechanism Elucidated by a Computational Study

Por Bojarski, Krzysztof K., Karczyńska, Agnieszka S., Samsonov, Sergey A.
Publicado no J Chem Inf Model (2020)

UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics

Por Czaplewski, Cezary, Karczyńska, Agnieszka, Sieradzan, Adam K, Liwo, Adam
Publicado no Nucleic Acids Res (2018)

A structural model of the immune checkpoint CD160–HVEM complex derived from HDX-mass spectrometry and molecular modeling

Por Kuncewicz, Katarzyna, Spodzieja, Marta, Sieradzan, Adam, Karczyńska, Agnieszka, Dąbrowska, Katarzyna, Dadlez, Michał, Speiser, Daniel E., Derre, Laurent, Rodziewicz-Motowidło, Sylwia
Publicado no Oncotarget (2019)

Fragments of gD Protein as Inhibitors of BTLA/HVEM Complex Formation - Design, Synthesis, and Cellular Studies

Por Kuncewicz, Katarzyna, Battin, Claire, Sieradzan, Adam, Karczyńska, Agnieszka, Orlikowska, Marta, Wardowska, Anna, Pikuła, Michał, Steinberger, Peter, Rodziewicz-Motowidło, Sylwia, Spodzieja, Marta
Publicado no Int J Mol Sci (2020)

Disulfide-Linked Peptides for Blocking BTLA/HVEM Binding

Por Spodzieja, Marta, Kuncewicz, Katarzyna, Sieradzan, Adam, Karczyńska, Agnieszka, Iwaszkiewicz, Justyna, Cesson, Valérie, Węgrzyn, Katarzyna, Zhukov, Igor, Maszota-Zieleniak, Martyna, Michielin, Olivier, Speiser, Daniel E., Zoete, Vincent, Derré, Laurent, Rodziewicz-Motowidło, Sylwia
Publicado no Int J Mol Sci (2020)

Performance of protein-structure predictions with the physics-based UNRES force field in CASP11

Por Krupa, Paweł, Mozolewska, Magdalena A., Wiśniewska, Marta, Yin, Yanping, He, Yi, Sieradzan, Adam K., Ganzynkowicz, Robert, Lipska, Agnieszka G., Karczyńska, Agnieszka, Ślusarz, Magdalena, Ślusarz, Rafał, Giełdoń, Artur, Czaplewski, Cezary, Jagieła, Dawid, Zaborowski, Bartłomiej, Scheraga, Harold A., Liwo, Adam
Publicado no Bioinformatics (2016)

Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13

Por Karczyńska, Agnieszka S., Ziȩba, Karolina, Uciechowska, Urszula, Mozolewska, Magdalena A., Krupa, Paweł, Lubecka, Emilia A., Lipska, Agnieszka G., Sikorska, Celina, Samsonov, Sergey A., Sieradzan, Adam K., Giełdoń, Artur, Liwo, Adam, Ślusarz, Rafał, Ślusarz, Magdalena, Lee, Jooyoung, Joo, Keehyoung, Czaplewski, Cezary
Publicado no J Chem Inf Model (2020)

Assessment of chemical-crosslink-assisted protein structure modeling in CASP13

Por Fajardo, J. Eduardo, Shrestha, Rojan, Gil, Nelson, Belsom, Adam, Crivelli, Silvia N., Czaplewski, Cezary, Fidelis, Krzysztof, Grudinin, Sergei, Karasikov, Mikhail, Karczyńska, Agnieszka S., Kryshtafovych, Andriy, Leitner, Alexander, Liwo, Adam, Lubecka, Emilia A., Monastyrskyy, Bohdan, Pagès, Guillaume, Rappsilber, Juri, Sieradzan, Adam K., Sikorska, Celina, Trabjerg, Esben, Fiser, Andras
Publicado no Proteins (2019)

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

Por Lensink, Marc F., Brysbaert, Guillaume, Nadzirin, Nurul, Velankar, Sameer, Chaleil, Raphaël A. G., Gerguri, Tereza, Bates, Paul A., Laine, Elodie, Carbone, Alessandra, Grudinin, Sergei, Kong, Ren, Liu, Ran-Ran, Xu, Xi-Ming, Shi, Hang, Chang, Shan, Eisenstein, Miriam, Karczynska, Agnieszka, Czaplewski, Cezary, Lubecka, Emilia, Lipska, Agnieszka, Krupa, Paweł, Mozolewska, Magdalena, Golon, Łukasz, Samsonov, Sergey, Liwo, Adam, Crivelli, Silvia, Pagès, Guillaume, Karasikov, Mikhail, Kadukova, Maria, Yan, Yumeng, Huang, Sheng-You, Rosell, Mireia, Rodríguez-Lumbreras, Luis A., Romero-Durana, Miguel, Díaz-Bueno, Lucía, Fernandez-Recio, Juan, Christoffer, Charles, Terashi, Genki, Shin, Woong-Hee, Aderinwale, Tunde, Subraman, Sai Raghavendra Maddhuri Venkata, Kihara, Daisuke, Kozakov, Dima, Vajda, Sandor, Porter, Kathryn, Padhorny, Dzmitry, Desta, Israel, Beglov, Dmitri, Ignatov, Mikhail, Kotelnikov, Sergey, Moal, Iain H., Ritchie, David W., de Beauchêne, Isaure Chauvot, Maigret, Bernard, Devignes, Marie-Dominique, Echartea, Maria E. Ruiz, Barradas-Bautista, Didier, Cao, Zhen, Cavallo, Luigi, Oliva, Romina, Cao, Yue, Shen, Yang, Baek, Minkyung, Park, Taeyong, Woo, Hyeonuk, Seok, Chaok, Braitbard, Merav, Bitton, Lirane, Scheidman-Duhovny, Dina, Dapkūnas, Justas, Olechnovič, Kliment, Venclovas, Česlovas, Kundrotas, Petras J., Belkin, Saveliy, Chakravarty, Devlina, Badal, Varsha D., Vakser, Ilya A., Vreven, Thom, Vangaveti, Sweta, Borrman, Tyler, Weng, Zhiping, Guest, Johnathan D., Gowthaman, Ragul, Pierce, Brian G., Xu, Xianjin, Duan, Rui, Qiu, Liming, Hou, Jie, Merideth, Benjamin Ryan, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Koukos, Panagiotis I., Roel-Touris, Jorge, Ambrosetti, Francesco, Geng, Cunliang, Schaarschmidt, Jörg, Trellet, Mikael E., Melquiond, Adrien S. J., Xue, Li, Jiménez-García, Brian, van Noort, Charlotte W., Honorato, Rodrigo V., Bonvin, Alexandre M. J. J., Wodak, Shoshana J.
Publicado no Proteins (2019)