Ab Initio Prediction of Transcription Factor Targets Using Structural Knowledge

Por Kaplan, Tommy, Friedman, Nir, Margalit, Hanah
Publicado em 2005

A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval

Por Habib, Naomi, Kaplan, Tommy, Margalit, Hanah, Friedman, Nir
Publicado em 2008

Nucleosome positioning from tiling microarray data

Por Yassour, Moran, Kaplan, Tommy, Jaimovich, Ariel, Friedman, Nir
Publicado em 2008

Correction: A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval

Por Habib, Naomi, Kaplan, Tommy, Margalit, Hanah, Friedman, Nir
Publicado em 2011

Contribution of epigenetic mechanisms to variation in cancer risk among tissues

Por Klutstein, Michael, Moss, Joshua, Kaplan, Tommy, Cedar, Howard
Publicado no Proc Natl Acad Sci U S A (2017)

TAF7L modulates brown adipose tissue formation

Por Zhou, Haiying, Wan, Bo, Grubisic, Ivan, Kaplan, Tommy, Tjian, Robert
Publicado em 2014

Roles for H2A.Z and Its Acetylation in GAL1 Transcription and Gene Induction, but Not GAL1-Transcriptional Memory

Por Halley, Jeffrey E., Kaplan, Tommy, Wang, Alice Y., Kobor, Michael S., Rine, Jasper
Publicado em 2010

Stable Binding of the Conserved Transcription Factor Grainy Head to its Target Genes Throughout Drosophila melanogaster Development

Por Nevil, Markus, Bondra, Eliana R., Schulz, Katharine N., Kaplan, Tommy, Harrison, Melissa M.
Publicado no Genetics (2017)

Zelda Binding in the Early Drosophila melanogaster Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition

Por Harrison, Melissa M., Li, Xiao-Yong, Kaplan, Tommy, Botchan, Michael R., Eisen, Michael B.
Publicado em 2011

Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition

Por Li, Xiao-Yong, Harrison, Melissa M, Villalta, Jacqueline E, Kaplan, Tommy, Eisen, Michael B
Publicado no eLife (2014)

Taf7l cooperates with Trf2 to regulate spermiogenesis

Por Zhou, Haiying, Grubisic, Ivan, Zheng, Ke, He, Ying, Wang, P. Jeremy, Kaplan, Tommy, Tjian, Robert
Publicado em 2013

Extensive Divergence of Transcription Factor Binding in Drosophila Embryos with Highly Conserved Gene Expression

Por Paris, Mathilde, Kaplan, Tommy, Li, Xiao Yong, Villalta, Jacqueline E., Lott, Susan E., Eisen, Michael B.
Publicado em 2013

Single-Nucleosome Mapping of Histone Modifications in S. cerevisiae

Por Liu, Chih Long, Kaplan, Tommy, Kim, Minkyu, Buratowski, Stephen, Schreiber, Stuart L, Friedman, Nir, Rando, Oliver J
Publicado em 2005

Structure and Function of a Transcriptional Network Activated by the MAPK Hog1

Por Capaldi, Andrew P., Kaplan, Tommy, Liu, Ying, Habib, Naomi, Regev, Aviv, Friedman, Nir, O’Shea, Erin K.
Publicado em 2008

Dual functions of TAF7L in adipocyte differentiation

Por Zhou, Haiying, Kaplan, Tommy, Li, Yan, Grubisic, Ivan, Zhang, Zhengjian, Wang, P Jeremy, Eisen, Michael B, Tjian, Robert
Publicado em 2013

Quantitative Models of the Mechanisms That Control Genome-Wide Patterns of Transcription Factor Binding during Early Drosophila Development

Por Kaplan, Tommy, Li, Xiao-Yong, Sabo, Peter J., Thomas, Sean, Stamatoyannopoulos, John A., Biggin, Mark D., Eisen, Michael B.
Publicado em 2011

Genome-Wide Analysis of Androgen Receptor Targets Reveals COUP-TF1 as a Novel Player in Human Prostate Cancer

Por Perets, Ruth, Kaplan, Tommy, Stein, Ilan, Hidas, Guy, Tayeb, Shay, Avraham, Eti, Ben-Neriah, Yinon, Simon, Itamar, Pikarsky, Eli
Publicado em 2012

Cell Cycle– and Chaperone-Mediated Regulation of H3K56ac Incorporation in Yeast

Por Kaplan, Tommy, Liu, Chih Long, Erkmann, Judith A., Holik, John, Grunstein, Michael, Kaufman, Paul D., Friedman, Nir, Rando, Oliver J.
Publicado em 2008

Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo

Por Schulz, Katharine N., Bondra, Eliana R., Moshe, Arbel, Villalta, Jacqueline E., Lieb, Jason D., Kaplan, Tommy, McKay, Daniel J., Harrison, Melissa M.
Publicado no Genome Res (2015)

High Throughput Determination of TGFβ1/SMAD3 Targets in A549 Lung Epithelial Cells

Por Zhang, Yingze, Handley, Daniel, Kaplan, Tommy, Yu, Haiying, Bais, Abha S., Richards, Thomas, Pandit, Kusum V., Zeng, Qilu, Benos, Panayiotis V., Friedman, Nir, Eickelberg, Oliver, Kaminski, Naftali
Publicado em 2011