STAMP: a web tool for exploring DNA-binding motif similarities

od Mahony, Shaun, Benos, Panayiotis V.
Wydane 2007

ComiR: combinatorial microRNA target prediction tool

od Coronnello, Claudia, Benos, Panayiotis V.
Wydane 2013

HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models

od Kadri, Sabah, Hinman, Veronica, Benos, Panayiotis V
Wydane 2009

mirConnX: condition-specific mRNA-microRNA network integrator

od Huang, Grace T., Athanassiou, Charalambos, Benos, Panayiotis V.
Wydane 2011

FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting

od Corcoran, David L., Feingold, Eleanor, Benos, Panayiotis V.
Wydane 2005

DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies

od Mahony, Shaun, Auron, Philip E, Benos, Panayiotis V
Wydane 2007

Finding subtypes of transcription factor motif pairs with distinct regulatory roles

od Bais, Abha Singh, Kaminski, Naftali, Benos, Panayiotis V.
Wydane 2011

RNA Deep Sequencing Reveals Differential MicroRNA Expression during Development of Sea Urchin and Sea Star

od Kadri, Sabah, Hinman, Veronica F., Benos, Panayiotis V.
Wydane 2011

To bind or not to bind - FoxA1 determines estrogen receptor action in breast cancer progression

od Watters, Rebecca J, Benos, Panayiotis V, Oesterreich, Steffi
Wydane 2012

Evaluation of Causal Structure Learning Methods on Mixed Data Types

od Raghu, Vineet K., Poon, Allen, Benos, Panayiotis V.
Wydane w Proc Mach Learn Res (2018)

Causal network perturbations for instance-specific analysis of single cell and disease samples

od Buschur, Kristina L, Chikina, Maria, Benos, Panayiotis V
Wydane w Bioinformatics (2020)

Protecting the lungs but hurting the kidneys: causal inference study for the risk of ventilation-induced kidney injury in ARDS

od Yang, Haopu, Benos, Panayiotis V., Kitsios, Georgios D.
Wydane w Ann Transl Med (2020)

Additivity in protein–DNA interactions: how good an approximation is it?

od Benos, Panayiotis V., Bulyk, Martha L., Stormo, Gary D.
Wydane 2002

Electrostatic hot spot on DNA-binding domains mediates phosphate desolvation and the pre-organization of specificity determinant side chains

od Temiz, Alpay N., Benos, Panayiotis V., Camacho, Carlos J.
Wydane 2010

piMGM: incorporating multi-source priors in mixed graphical models for learning disease networks

od Manatakis, Dimitris V, Raghu, Vineet K, Benos, Panayiotis V
Wydane w Bioinformatics (2018)

An improvement of ComiR algorithm for microRNA target prediction by exploiting coding region sequences of mRNAs

od Bertolazzi, Giorgio, Benos, Panayiotis V., Tumminello, Michele, Coronnello, Claudia
Wydane w BMC Bioinformatics (2020)

Regulatory conservation of protein coding and microRNA genes in vertebrates: lessons from the opossum genome

od Mahony, Shaun, Corcoran, David L, Feingold, Eleanor, Benos, Panayiotis V
Wydane 2007

SPECTRAL CLUSTERING STRATEGIES FOR HETEROGENEOUS DISEASE EXPRESSION DATA()

od HUANG, GRACE T., CUNNINGHAM, KATHRYN I., BENOS, PANAYIOTIS V., CHENNUBHOTLA, CHAKRA S.
Wydane w Pac Symp Biocomput (2013)

T-RECS: STABLE SELECTION OF DYNAMICALLY FORMED GROUPS OF FEATURES WITH APPLICATION TO PREDICTION OF CLINICAL OUTCOMES

od Huang, Grace T., Tsamardinos, Ioannis, Raghu, Vineet, Kaminski, Naftali, Benos, Panayiotis V.
Wydane w Pac Symp Biocomput (2015)

Learning mixed graphical models with separate sparsity parameters and stability-based model selection

od Sedgewick, Andrew J., Shi, Ivy, Donovan, Rory M., Benos, Panayiotis V.
Wydane w BMC Bioinformatics (2016)