MIRTFnet: Analysis of miRNA Regulated Transcription Factors

gan Naeem, Haroon, Küffner, Robert, Zimmer, Ralf
Cyhoeddwyd 2011

On protocols and measures for the validation of supervised methods for the inference of biological networks

gan Schrynemackers, Marie, Küffner, Robert, Geurts, Pierre
Cyhoeddwyd 2013

Refining Ensembles of Predicted Gene Regulatory Networks Based on Characteristic Interaction Sets

gan Windhager, Lukas, Zierer, Jonas, Küffner, Robert
Cyhoeddwyd 2014

Detection of network motifs using three-way ANOVA

gan Tavakkolkhah, Pegah, Zimmer, Ralf, Küffner, Robert
Cyhoeddwyd yn PLoS One (2018)

Normalization and Gene p-Value Estimation: Issues in Microarray Data Processing

gan Fundel, Katrin, Küffner, Robert, Aigner, Thomas, Zimmer, Ralf
Cyhoeddwyd 2008

miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature

gan Naeem, Haroon, Küffner, Robert, Csaba, Gergely, Zimmer, Ralf
Cyhoeddwyd 2010

Petri Nets with Fuzzy Logic (PNFL): Reverse Engineering and Parametrization

gan Küffner, Robert, Petri, Tobias, Windhager, Lukas, Zimmer, Ralf
Cyhoeddwyd 2010

From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems

gan Geistlinger, Ludwig, Csaba, Gergely, Küffner, Robert, Mulder, Nicola, Zimmer, Ralf
Cyhoeddwyd 2011

A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae

gan Geistlinger, Ludwig, Csaba, Gergely, Dirmeier, Simon, Küffner, Robert, Zimmer, Ralf
Cyhoeddwyd 2013

ProSAS: a database for analyzing alternative splicing in the context of protein structures

gan Birzele, Fabian, Küffner, Robert, Meier, Franziska, Oefinger, Florian, Potthast, Christian, Zimmer, Ralf
Cyhoeddwyd 2008

Wisdom of crowds for robust gene network inference

gan Marbach, Daniel, Costello, James C., Küffner, Robert, Vega, Nicci, Prill, Robert J., Camacho, Diogo M., Allison, Kyle R., Kellis, Manolis, Collins, James J., Stolovitzky, Gustavo
Cyhoeddwyd 2012

DREAMTools: a Python package for scoring collaborative challenges

gan Cokelaer, Thomas, Bansal, Mukesh, Bare, Christopher, Bilal, Erhan, Bot, Brian M., Chaibub Neto, Elias, Eduati, Federica, de la Fuente, Alberto, Gönen, Mehmet, Hill, Steven M., Hoff, Bruce, Karr, Jonathan R., Küffner, Robert, Menden, Michael P., Meyer, Pablo, Norel, Raquel, Pratap, Abhishek, Prill, Robert J., Weirauch, Matthew T., Costello, James C., Stolovitzky, Gustavo, Saez-Rodriguez, Julio
Cyhoeddwyd yn F1000Res (2016)