MIRTFnet: Analysis of miRNA Regulated Transcription Factors

Por Naeem, Haroon, Küffner, Robert, Zimmer, Ralf
Publicado em 2011

On protocols and measures for the validation of supervised methods for the inference of biological networks

Por Schrynemackers, Marie, Küffner, Robert, Geurts, Pierre
Publicado em 2013

Refining Ensembles of Predicted Gene Regulatory Networks Based on Characteristic Interaction Sets

Por Windhager, Lukas, Zierer, Jonas, Küffner, Robert
Publicado em 2014

Detection of network motifs using three-way ANOVA

Por Tavakkolkhah, Pegah, Zimmer, Ralf, Küffner, Robert
Publicado no PLoS One (2018)

Normalization and Gene p-Value Estimation: Issues in Microarray Data Processing

Por Fundel, Katrin, Küffner, Robert, Aigner, Thomas, Zimmer, Ralf
Publicado em 2008

miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature

Por Naeem, Haroon, Küffner, Robert, Csaba, Gergely, Zimmer, Ralf
Publicado em 2010

Petri Nets with Fuzzy Logic (PNFL): Reverse Engineering and Parametrization

Por Küffner, Robert, Petri, Tobias, Windhager, Lukas, Zimmer, Ralf
Publicado em 2010

From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems

Por Geistlinger, Ludwig, Csaba, Gergely, Küffner, Robert, Mulder, Nicola, Zimmer, Ralf
Publicado em 2011

A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae

Por Geistlinger, Ludwig, Csaba, Gergely, Dirmeier, Simon, Küffner, Robert, Zimmer, Ralf
Publicado em 2013

ProSAS: a database for analyzing alternative splicing in the context of protein structures

Por Birzele, Fabian, Küffner, Robert, Meier, Franziska, Oefinger, Florian, Potthast, Christian, Zimmer, Ralf
Publicado em 2008

Wisdom of crowds for robust gene network inference

Por Marbach, Daniel, Costello, James C., Küffner, Robert, Vega, Nicci, Prill, Robert J., Camacho, Diogo M., Allison, Kyle R., Kellis, Manolis, Collins, James J., Stolovitzky, Gustavo
Publicado em 2012

DREAMTools: a Python package for scoring collaborative challenges

Por Cokelaer, Thomas, Bansal, Mukesh, Bare, Christopher, Bilal, Erhan, Bot, Brian M., Chaibub Neto, Elias, Eduati, Federica, de la Fuente, Alberto, Gönen, Mehmet, Hill, Steven M., Hoff, Bruce, Karr, Jonathan R., Küffner, Robert, Menden, Michael P., Meyer, Pablo, Norel, Raquel, Pratap, Abhishek, Prill, Robert J., Weirauch, Matthew T., Costello, James C., Stolovitzky, Gustavo, Saez-Rodriguez, Julio
Publicado no F1000Res (2016)