Dr.seq2: A quality control and analysis pipeline for parallel single cell transcriptome and epigenome data

Autor Zhao, Chengchen, Hu, Sheng’en, Huo, Xiao, Zhang, Yong
Vydáno v PLoS One (2017)

CAM: A quality control pipeline for MNase-seq data

Autor Hu, Sheng’en, Chen, Xiaolan, Liao, Ji, Chen, Yiqing, Zhao, Chengchen, Zhang, Yong
Vydáno v PLoS One (2017)

Ectopic Tcf1 expression instills a stem-like program in exhausted CD8(+) T cells to enhance viral and tumor immunity

Autor Shan, Qiang, Hu, Sheng’en, Chen, Xia, Danahy, Derek B., Badovinac, Vladimir P., Zang, Chongzhi, Xue, Hai-Hui
Vydáno v Cell Mol Immunol (2020)

Analysis of optimized DNase-seq reveals intrinsic bias in transcription factor footprint identification

Autor He, Housheng Hansen, Meyer, Clifford A., Hu, Sheng'en Shawn, Chen, Mei-Wei, Zang, Chongzhi, Liu, Yin, Rao, Prakash K., Fei, Teng, Xu, Han, Long, Henry, Liu, X. Shirley, Brown, Myles
Vydáno 2013

CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human

Autor Qin, Bo, Zhou, Meng, Ge, Ying, Taing, Len, Liu, Tao, Wang, Qian, Wang, Su, Chen, Junsheng, Shen, Lingling, Duan, Xikun, Hu, Sheng'en, Li, Wei, Long, Henry, Zhang, Yong, Liu, X. Shirley
Vydáno 2012

High-dimensional genomic data bias correction and data integration using MANCIE

Autor Zang, Chongzhi, Wang, Tao, Deng, Ke, Li, Bo, Hu, Sheng'en, Qin, Qian, Xiao, Tengfei, Zhang, Shihua, Meyer, Clifford A., He, Housheng Hansen, Brown, Myles, Liu, Jun S., Xie, Yang, Liu, X. Shirley
Vydáno v Nat Commun (2016)

Comparative analysis of metazoan chromatin organization

Autor Ho, Joshua W. K., Jung, Youngsook L., Liu, Tao, Alver, Burak H., Lee, Soohyun, Ikegami, Kohta, Sohn, Kyung-Ah, Minoda, Aki, Tolstorukov, Michael Y., Appert, Alex, Parker, Stephen C. J., Gu, Tingting, Kundaje, Anshul, Riddle, Nicole C., Bishop, Eric, Egelhofer, Thea A., Hu, Sheng’en Shawn, Alekseyenko, Artyom A., Rechtsteiner, Andreas, Asker, Dalal, Belsky, Jason A., Bowman, Sarah K., Chen, Q. Brent, Chen, Ron A-J, Day, Daniel S., Dong, Yan, Dose, Andrea C., Duan, Xikun, Epstein, Charles B., Ercan, Sevinc, Feingold, Elise A., Ferrari, Francesco, Garrigues, Jacob M., Gehlenborg, Nils, Good, Peter J., Haseley, Psalm, He, Daniel, Herrmann, Moritz, Hoffman, Michael M., Jeffers, Tess E., Kharchenko, Peter V., Kolasinska-Zwierz, Paulina, Kotwaliwale, Chitra V., Kumar, Nischay, Langley, Sasha A., Larschan, Erica N., Latorre, Isabel, Libbrecht, Maxwell W., Lin, Xueqiu, Park, Richard, Pazin, Michael J., Pham, Hoang N., Plachetka, Annette, Qin, Bo, Schwartz, Yuri B., Shoresh, Noam, Stempor, Przemyslaw, Vielle, Anne, Wang, Chengyang, Whittle, Christina M., Xue, Huiling, Kingston, Robert E., Kim, Ju Han, Bernstein, Bradley E., Dernburg, Abby F., Pirrotta, Vincenzo, Kuroda, Mitzi I., Noble, William S., Tullius, Thomas D., Kellis, Manolis, MacAlpine, David M., Strome, Susan, Elgin, Sarah C. R., Liu, Xiaole Shirley, Lieb, Jason D., Ahringer, Julie, Karpen, Gary H., Park, Peter J.
Vydáno v Nature (2014)